Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_008720.1 Length=70153 Score E Sequences producing significant alignments: (Bits) Value seq4281 141 4e-29 >seq4281 Length=1049 Score = 141 bits (156), Expect = 4e-29 Identities = 336/506 (66%), Gaps = 4/506 (1%) Strand=Plus/Minus Query 58913 GAATCCTATGAAGTAATGAACTACATTCAATGGATACCCTAGTCTATTCACGGCAGCATC 58972 ||| || | ||||||||| || || | || ||||| |||| | | |||||||| Sbjct 572 GAACCCGACGAAGTAATGCACCACTTCGCGGGGGTACCCGAGTCGTTCAAACGCAGCATC 513 Query 58973 AAATGTCAGTGGAACCAGGTCAAGTCTTCCATCAATAATCCAGTCATAGTCTTCAATCTG 59032 ||||| || || |||| ||| || |||| || |||||||| || || || ||||| Sbjct 512 GAATGTGAGCGGCACCAAGTCCAGGTCGCCATTGATGATCCAGTCGTAATCCTCGATCTG 453 Query 59033 AACAAAGTCATAGTTAGGGAATATCCACTCTGACTCAGGGAAGTTTAATCGACCTGTTAG 59092 || ||||| || || || |||| | | | |||||||| | || ||| || Sbjct 452 CACGAAGTCGTAATTCGGCGCCTTCCAGTATTCGACCGGGAAGTTCAGCCGCTTTGTCAG 393 Query 59093 TTCAGATGCAGGGGACATAATCTGTGGTGTAAAGAACAGAAGGGTTGCCTGTGCATCAGG 59152 ||| | || ||||| ||||| || || |||||||| || || ||||||||||| || Sbjct 392 CTCACTCGATGGCGACATGATCTGAGGGGTGAAGAACAGCAGCGTGGCCTGTGCATCGGG 333 Query 59153 GAACTTACCTTTTACATAGTCACGTATGTAGTTAGTGGATTGACCCAGTTTGGTACATAG 59212 ||||| | || || ||| || || | || || || || ||||| || | || || Sbjct 332 GAACTCGGCCTTGACGATGTCGCGCATCTGATTGGTTGACTGGCCCAGCTTAGCGCACAG 273 Query 59213 CCAATCTACATAAGGCCATTGATGTTCTTCTACCGGAGCAAAGATGTCTTTAATCCACGG 59272 |||||| || ||||| | || || | || | | || || | || |||||||| Sbjct 272 CCAATCGACGTAAGGATACTGCACCGGGTCGAGCGCATCGAAAATATTCTTGATCCACGG 213 Query 59273 AGTAGGTACATCATTACCTGTCTCTTCTTTGTATAAAGCCATAGTCTT--AGGGTCATAA 59330 || || | | || ||||| | | ||| ||| || || | |||||| Sbjct 212 CGTGGGCGCGTACAAGCCCGTCTCAGCGT--GATACAGCTCGAGCGTTGCCGCGTCATAG 155 Query 59331 ATACAAGGGGCATTCTTACCCTCACCTGTATTGTATGAACCATCCCACCACCAAGGCTCA 59390 || || ||| ||||| | || | ||||| || || |||||||||||||||||| Sbjct 154 ATGCACGGGCTGTTCTTGCTGGTGCCGTTGTTGTAGGAGCCGTCCCACCACCAAGGCTCA 95 Query 59391 CCAATCTGGAAGTACAGCTCCATTCC 59416 || ||||||||| | || |||| || Sbjct 94 CCGATCTGGAAGCGCGGCACCATACC 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 224002551531704