Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq109654 95.1 9e-15 seq115941 82.4 5e-11 >seq109654 Length=28343 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 || ||||| || || | ||||| |||| || || ||||| || | || || | Sbjct 19335 AATATGCAGATCTTCGTCAAAACCCTAACCGGTAAGACCATCACTCTCGAGGTCGAGAGC 19276 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | | || ||||| || ||| || || ||||| | ||| || Sbjct 19275 TCCGACACCATCGACAATGTTAAGGCCAAGATTCAAGACAAGGAGGGGATCCCTCCGGAC 19216 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| |||||||| ||||| || || || |||||| | ||| ||||||||||| Sbjct 19215 CAGCAGAGGCTTATCTTCGCTGGAAAGCAGCTCGAAGATGGCAGAACCCTGGCCGATTAC 19156 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||| |||||||| || ||||||||| |||| Sbjct 19155 AATATCCAGAAGGAGTCGACTCTTCATCTGGT 19124 >seq115941 Length=36387 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || | || || ||||| || || |||| || | | Sbjct 5120 ATGCAGATTTTTGTTAAGACCCTTACCGGGAAAACAATAACATTGGAGGTTGAGAGCTCC 5061 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| || ||||| |||||| | || | |||| Sbjct 5060 GATACTATTGACAATGTCAAGGCAAAGATCCAAGATAAGGAGGGTATCCCACCAGACCAG 5001 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||||||||| || || ||||| || || || || | ||||||||||| Sbjct 5000 CAGAGACTTATCTTTGCCGGAAAGCAACTCGAGGACGGAAGGACACTTGCCGATTACAAC 4941 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || ||||| || ||||| ||| | || | ||| | || || ||| Sbjct 4940 ATACAAAAGGAGTCCACTCTCCATCTAGTGCTTCGTCTCCGTGGTGGA 4893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357546589156504