Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_009016.1 Length=38197 Score E Sequences producing significant alignments: (Bits) Value seq98467 284 3e-72 seq124121 250 6e-62 >seq98467 Length=19475 Score = 284 bits (314), Expect = 3e-72 Identities = 401/559 (72%), Gaps = 12/559 (2%) Strand=Plus/Plus Query 14782 TCCCGCCGTCCACCATCGCCATGGGCGCAGTGGCCGCGGTGAAGCCGTGGGAGTCTCCAG 14841 || ||||||| || | ||||| | ||| ||||| ||| |||| |||||| ||||| Sbjct 6065 TCGCGCCGTCGTCCCTGGCCATCGCGGCACTGGCCAAGGTCAAGCAATGGGAGAGTCCAG 6124 Query 14842 GCAACCAAGG--CGT--GCTGATTCAGGATGTGGCTCGAGTCATCGACTACAACATCCTG 14897 ||||||| | ||| || || ||| || | || ||| |||| ||||||||||| Sbjct 6125 GCAACCAGGTGACGTTCGCCGA----GGACGTTTCCCGCGTCGTCGAGTACAACATCCTC 6180 Query 14898 GACAAGAGCACCGAGGGTGACCTGCTCAACCGTAACGGCGTGAGCTACTTTGCTCGCACT 14957 |||| |||||| || |||||||||||||| ||||||||||||||| || ||||| Sbjct 6181 GACACCTCCACCGAAGGCGACCTGCTCAACCGCTACGGCGTGAGCTACTACGCCCGCACC 6240 Query 14958 AGCATGGGCGGCTTTAGTCTTATCGGCAACCGCACGGTGACGGGCAAGTTTATCTCGTTT 15017 | | |||||||| || | || ||||| | | || |||||||| ||| | Sbjct 6241 ATTCTCGGCGGCTTCTCGCTGCTGGGTAACCGTTCCATCACCGGCAAGTTCATCAGCTAC 6300 Query 15018 GTCGGCCTCGAGGACGCCATCGCTCGCAAGCTGG--AAGCAGCCAGCCAGCGTGCTATGT 15075 ||||||||||| ||||| ||| |||||||||| ||| ||| | ||| || ||| Sbjct 6301 GTCGGCCTCGAAGACGCGATCAGCCGCAAGCTGGTCAAG--GCCGGTCAGAAAGCCATGG 6358 Query 15076 CCAAGCAGCTGACCAAGAGCTTCATGGAGCAGGAAATCAAGAAGATTAACCTGTTCATGC 15135 ||||| | || |||||| ||||||||| ||||| ||||| || ||| | ||| Sbjct 6359 CCAAGAACCTCACCAAGTCCTTCATGGACCAGGAGGTCAAGCGCATCAACGACTGGCTGC 6418 Query 15136 AAGACCTTGTCGCGGCTGAAATTATCCCAGGCGGTGAAGTGTACCTGCACCCGACTCTTA 15195 || ||| ||||| | |||| ||||| ||||| ||||||||||||||| | | Sbjct 6419 AAACCCTGGTCGCCGACGAAACCATCCCCGGCGGCAGCGTGTACCTGCACCCGGAATTGA 6478 Query 15196 ACACGGTCGAGCGGTATAAGAACGGCTCCTGGTACATCGTGATCGATTACGGCCGTTACA 15255 ||| |||||| ||| ||||||||| | |||| |||||| ||||| |||||||| ||| Sbjct 6479 ACAGTGTCGAGAAGTACAAGAACGGCACTTGGTTCATCGTCATCGACTACGGCCGCTACG 6538 Query 15256 GCCCGAACGAGCACATGATTTTCCACCTGAATGCGGTAGACCGCATCGTCGAAGAGTTCA 15315 |||||||| |||||||||| || || ||||| || ||| |||| ||||| Sbjct 6539 CGCCGAACGAACACATGATTTATCAACTCAATGCCCGCGATGAAATCATCGAGCAGTTCC 6598 Query 15316 TTGAGGAGGTGCTGTAATG 15334 | ||||| || || ||||| Sbjct 6599 TGGAGGACGTTCTCTAATG 6617 Score = 100 bits (110), Expect = 7e-17 Identities = 181/261 (69%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 20155 GAGTTCAAGAAGCGCCGCTCGCGCAGCTTCGAGAAGATAACCCTCGGCGATCTGTTCCGC 20214 |||||||||||||| || | |||| || | ||| | ||| || | ||||| || Sbjct 10008 GAGTTCAAGAAGCGACGAACCGCCAGCCACGGGCCGATCAGCCTGGGGGCGCTGTTTCGT 10067 Query 20215 CAGGTGATAACGACCCACGGCTACTCGTCGCGGGTAGCGCCTGACCTGGACG-CCATCAT 20273 || ||| ||| | |||||| |||| | || || |||| || |||| | | || Sbjct 10068 CAATTGACCACGCGCTACGGCTTCTCGCCCCGTGTGGCGCACGATTTGGAAGATGAGCA- 10126 Query 20274 GCTCGAGCACGTTGACCAGTCCGACGAGACGGACATGAGTTTTCTGACCAGGCTGGCCAA 20333 | || |||| | |||||| || | || | |||||| ||| |||| || ||||||| Sbjct 10127 GATCCAGCATATCGACCAGACCAATGAAAGTGACATGGCGTTTTTGACGCGGTTGGCCAA 10186 Query 20334 GCGTTACGACGCCGTCACCAAGCCAGTCGACCAGCTCTATGTTCTGGCCCGTCGTGGTCA 20393 ||| | |||||| || |||| || |||||| |||| ||||| |||| |||| || || Sbjct 10187 GCGATTCGACGCGGTGGCCAAACCCGTCGACGAGCTGTATGTGCTGGGCCGTAAAGGGCA 10246 Query 20394 GGTTAAAAGCCTGTCCGGGCA 20414 | | ||| |||| |||||| Sbjct 10247 GATCAAATCGCTGT-CGGGCA 10266 >seq124121 Length=49848 Score = 250 bits (276), Expect = 6e-62 Identities = 451/648 (70%), Gaps = 26/648 (4%) Strand=Plus/Plus Query 21029 TGGATGGGTGGCAAGCGCCGCCTGGCTAAACACATCCTGCCAGAGTTCCCAGAGCACGAG 21088 |||||||| ||||| ||||||||||| | | | || | || |||||| |||||| Sbjct 39796 TGGATGGGCGGCAAACGCCGCCTGGCCGACCGCCTCATCCCGCTATTCCCACCCCACGAG 39855 Query 21089 TGCTATGTGGAGCCGTTCTGTGGGGCCGCTGCCCTGTTTTTTATGAAGATGCCGACCAAG 21148 ||||| || || ||| || ||||||| |||| || | | || ||| Sbjct 39856 TGCTACGTCGAAGTCTTCGCCGGCAGCGCTGCCTTGTTCTTCCTCC-GCCCCCAACCCGC 39914 Query 21149 ----GTTGAAGTCATCAACGACGTGAACAGCGACCTGGTTAACCTGTACCGCGTGGTGCA 21204 ||||||||| |||||||| | ||| |||||||||| |||||||||||| || || Sbjct 39915 ACCTGTTGAAGTCCTCAACGACATCAACGGCGACCTGGTATGCCTGTACCGCGTCGTACA 39974 Query 21205 GCATCACCTCGAGGAGTTCGTCCGCCAGTTCAAATGGGCGCTTATCAGCCGCGAGATGTT 21264 | ||||| | || |||||||||||||| ||||| |||||||| | | || || | || Sbjct 39975 GAATCACTTGGAAGAGTTCGTCCGCCAATTCAAGTGGGCGCTCAGCTCACGGCAGGTATT 40034 Query 21265 CAAGTGGC--TGGACGATACGCCCGTCGAGACCCTGACCGATATTCAGCGTGCTGCCCGG 21322 | |||||| || || |||||| || ||||| ||||| || || ||||| ||||| Sbjct 40035 CGAGTGGCAAAAGATGACCCGCCCG--GAAACCCTCACCGACATCCAACGTGCGGCCCGA 40092 Query 21323 TTCTATTACCTGCAGCA-GATGGGCTTCGGCGCCAAGATTACCGGCCGCACCTTTGGCAC 21381 |||| ||||| || || ||| | |||| ||||| | |||||| ||||| || || Sbjct 40093 TTCTTCTACCTCCAACACCATGCG-TTCGCTGCCAAAGTCTCCGGCCAGACCTTCGGTAC 40151 Query 21382 GGCCACCACTACGCCGCCAAAACTGAACCTGCTGCGCCTCGAGGAGACGCTAAGCCAGGC 21441 ||| || || || |||| | | || ||| | || ||||||||| || | | | Sbjct 40152 GGCGACAACAGCGGCGCCGA---TCAATCTGTTACGGATCGAGGAGAACCT--TTCCGCC 40206 Query 21442 GCA--CCTACGCCTGAGCCGTGTTTACGTTGAGCACCTGGACTGGCAGGCGTGCATGGAA 21499 ||| | || ||| | | ||||| || ||||| |||| | ||| | || Sbjct 40207 GCATGGCAGCGGCTGGCCGGAACCTACGTGGAAAACCTGCCATGGCTCGACTGCGTCCAA 40266 Query 21500 AAGTACGACCGACCGCACACCCTGTTTTACCTCGACCCGCCGTACTGGCAGACCGAGGGC 21559 |||||||| || || ||| | ||| | ||||| ||||||||| || || ||| Sbjct 40267 CGCTACGACCGGCCACATACCTTTCACTACATGGACCCACCGTACTGGAAGGTCGCAGGC 40326 Query 21560 TACGGTGTCGACTTCCCCTTCGAGCAATATGAGCGCATGGCTGA---GATG-GCCAGGAC 21615 ||||||||||| || ||||| || ||||| |||| ||||| || ||| ||||| | Sbjct 40327 TACGGTGTCGATTTTCCCTTTGATCAATACGAGCAGATGGCCGAATTCATGCGCCAGTGC 40386 Query 21616 GGTGAAGGGTAAGGTGGTGATCAGCATCAACGACCACCCGGATATCCG 21663 | |||| | |||| || |||| ||||||||||||||||||||||| Sbjct 40387 G----AGGGGAGGGTGATGGTCAGTATCAACGACCACCCGGATATCCG 40430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121916704236008