Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq109206 190 4e-43 seq26752 125 1e-23 >seq109206 Length=27697 Score = 190 bits (210), Expect = 4e-43 Identities = 561/859 (65%), Gaps = 12/859 (1%) Strand=Plus/Minus Query 42289 AGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGG 42348 || ||| ||| || ||| |||||||||||||| || ||| |||||| || |||| Sbjct 8570 AGTACCCGGAGATTTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACGGCGGAGG 8511 Query 42349 AGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTT 42408 || | || || || | |||| || |||||| || || | || ||| | Sbjct 8510 AGGTGGATCTCTCCCAAGACAATACCCAATGGGAGAACATGACTCCCGATGAGAAGCACT 8451 Query 42409 TCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGG 42468 || | | | || || ||||| |||||||| |||||||| || ||||| || | Sbjct 8450 TCATTTCCCATGTTCTTGCTTTCTTTGCCGCCTCAGACGGCATCGTTTTGGAGAATCTCG 8391 Query 42469 CCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGA 42528 || ||||||||||| ||| | || | |||||||| ||| || || ||||||| Sbjct 8390 CCGGAAGGTTCATGAAGGAGATTCAAGTCGCGGAGGCGCGTGCCTTTTATGGGTTCCAGA 8331 Query 42529 TAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGG 42588 | || || ||||| | ||||||||| ||||| || | | || ||||| | Sbjct 8330 TCGCTATCGAGAATATTCACTCTGAGATGTACAGTCTCTTGTTGGAGACTTACATTAAAG 8271 Query 42589 ATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGA 42648 | || | ||| ||| | || || | ||||| ||||| || || || | |||| Sbjct 8270 ACCCGGCTGAGAAGAACCGCCTCTTTCACGCCATCGAGACCATTCCTTGTGTGGCCAAGA 8211 Query 42649 AGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGG 42708 |||| | ||||| | | |||||||| | | || | | |||| ||| || || Sbjct 8210 AGGCTCAGTGGGCCATGAGGTGGATCGACGGCTCAGA---ATCTTTCGCGGAGCGGTTGA 8154 Query 42709 TAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGC 42768 | || || || ||||||||| ||||||||||| || |||| | | || || |||| Sbjct 8153 TCGCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTTTGGC 8094 Query 42769 TCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACG 42828 | ||| | | || |||||| || ||||| ||||| ||||| | || | || | Sbjct 8093 TAAAGAAACGCGGGTTGATGCCGGGTCTCACGTTCTCTAACGAGTTGATATCGCGAGATG 8034 Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 | ||| | || | || || || || | || | | || | || | | | |||| Sbjct 8033 AAGGGTTACACTGCGATTTCGCGTGTTTGCTTTACACG---CTTCTGAAGAAGAAGCTGA 7977 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 ||||||| ||| ||| |||||| || ||||| || ||||||| ||||||| || Sbjct 7976 GCGAGGAGCGAGTCAGGGGAATCATCCGCGATGCCGTTGATATCGAGAGGGAGTTCGTCT 7917 Query 42949 CGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATC 43007 | | ||||| ||| | |||| || |||||| || || ||||||||||| ||| Sbjct 7916 GTGATGCTCTGCCTTGTG-CGTTGGTGGGTATGAACGGTGATCTTATGTGCAAGTATATC 7858 Query 43008 CAGTACGTCGCCGACCATCTCCTG--TGCCAGATGGGTCTCAGCCGCCTCTACAACACGC 43065 ||| ||| || || | | || ||| | ||||| | | ||||||| | | Sbjct 7857 GAGTTCGTGGCTGATCGATTGATGGATGC--GTTGGGTTACGCCAAGATCTACAATGCCC 7800 Query 43066 CGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGA 43125 | |||||| || | |||||| || |||||| |||| ||||||||||| || |||| Sbjct 7799 AGAACCCCTTTGATTGGATGGAGCTGATATCGTTGCAGGGTAAGACCAACTTCTTTGAGA 7740 Query 43126 AGCGCGTCGCCGACTACCA 43144 || | || | || ||||| Sbjct 7739 AGAGGGTTGGAGAGTACCA 7721 >seq26752 Length=1779 Score = 125 bits (138), Expect = 1e-23 Identities = 311/466 (67%), Gaps = 22/466 (5%) Strand=Plus/Plus Query 245141 GCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGC----GTTGAAGAT 245196 || || || |||||||||||||||||||| || | |||||| |||| ||| Sbjct 1 GCACCTGGGCGCTTGTTGCCTCCCTGGTCGACG----TAGCGAGCGGTGTTGTTGTAGAC 56 Query 245197 GCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTT 245256 || || | ||||| | ||||| || ||| |||||||| ||||| ||||| | Sbjct 57 ACGAAGCATGGGCACGAGACCGTTGGAAGTGCCATTGGTGCCACCAATGTAAGCGCCAGT 116 Query 245257 GCCCC---TGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGC 245313 | | | || ||| || || | || | || || |||| ||||||||| | ||| Sbjct 117 GGCACGAATGCGGTGAGTGTTG---AGACCAATACCACCAGCGTTCTTGGAGATCATGGC 173 Query 245314 GCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAA 245373 |||| |||||| || || || ||||| |||||||| |||||||| || || || Sbjct 174 GCAGATCTTGAGAGTATCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGATGAGGAA 233 Query 245374 GCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGT 245433 ||| || | |||||| | || ||| | | | | |||| || || ||| ||| || || Sbjct 234 GCAAGACGCCAGCTGTGCCTGAGGGGTACCTGCGCTGAAGAGCGTAGGGGAGGCATGTGT 293 Query 245434 AAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTG 245493 ||||| | | || | | | ||| |||| || || ||||||| ||||||||| Sbjct 294 GAAGTACTTGTTGGACATGTAGTTGTAGGTCTCGATTGCGGCCTCGATGTCGTCGCCGTG 353 Query 245494 GATCTGCAGGGCGCA--CCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGT 245551 || ||| | ||| | ||||| ||||||| || ||||| | | | || Sbjct 354 GA--TGCCGACAGCAACACGCATGATCATGTGCTGTGGTCTCTCG--GCAACTTTGCCGT 409 Query 245552 CCCT--TGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595 | | ||| | || |||||||||||||||||||| |||||||| Sbjct 410 CAATGCGGAGAAGATATGAGCGCTCGAGCGTCTTGAAGCCAAAGTA 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942775421501760