Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq130631 87.8 1e-12 >seq130631 Length=123029 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 114333 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 114390 ||||||||| |||||||||||||||| |||||||| |||| || || ||| |||||| Sbjct 93322 TCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAAAAAG-AATATCCGAGGAAC 93380 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422 || ||||||| || ||||||||||| ||| || Sbjct 93381 CATAACTGATTTAATGAGCCATTCGCGGTTTC 93412 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 115530 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 115587 ||||||||| |||||||||||||||| |||||||| |||| || || ||| |||||| Sbjct 93322 TCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAAAAAG-AATATCCGAGGAAC 93380 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619 || ||||||| || ||||||||||| ||| || Sbjct 93381 CATAACTGATTTAATGAGCCATTCGCGGTTTC 93412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396421322405752