Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq109654 168 2e-36 seq115941 120 7e-22 seq108749 95.1 3e-14 seq86116 87.8 4e-12 >seq109654 Length=28343 Score = 168 bits (186), Expect = 2e-36 Identities = 176/230 (77%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || || ||||||| ||| || || || || || ||||||||| Sbjct 18650 CCACCACGGAGCCTTAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCG 18709 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | || ||||| || ||||||| | ||| || |||||| Sbjct 18710 AGGGTTCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTG---GTCTGGG 18766 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| || |||||||| || ||||| ||||| || || | ||| ||||| Sbjct 18767 GGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGATGATTCG 18826 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||||||||||||| ||||||| |||||| ||||| |||||||| Sbjct 18827 ACTTCGAGCGTGATCGTCTTTCCGGTCAAAGTCTTAACGAAGATCTGCAT 18876 Score = 129 bits (142), Expect = 1e-24 Identities = 170/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || | ||| | || || || ||||| || |||||||| Sbjct 18194 CCTCCACGGAGACGAAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCA 18253 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | |||||||| |||||||| |||||||| || |||||| Sbjct 18254 AGGGTACGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGG---TCTGGG 18310 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||| || || ||||||||||| || || ||||| || || | || |||| Sbjct 18311 GGAATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATTGTGTCGGAGCTC--- 18367 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||||||||| || || || || ||||||||||| Sbjct 18368 TCGACCTCAAGGGTGATGGTCTTCCCGGTGAGGGTTTTCACAAATATCTGCAT 18420 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || | || | ||| || || ||||| || || || ||| Sbjct 18422 CCGCCACGGAGACGAAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCAGCG 18481 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || |||||||| || | || ||||| ||||||||||| | ||| || ||| Sbjct 18482 AGGGTACGTCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTG---GTCTGGG 18538 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| || |||||||| || || || ||||| || || | ||| || || Sbjct 18539 GGGATCCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCGGAGGACTCG 18598 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 18599 ACCTCAAGAGTGATGGTCTTTCCAGTCAAGGTCTTGACGAAGATCTGCAT 18648 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || || | |||| ||| || || ||||| || || |||||| Sbjct 18878 CCACCACGGAGCCTGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCG 18937 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || ||||| || ||||||| | ||| ||| || Sbjct 18938 AGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGA 18997 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || || || || ||||| || || | |||| || || || Sbjct 18998 ATGCCTTCCTTGTCCTGTATCTTAGCCTTGACGTTGTCAATGGTATCGGAGGACTCGACC 19057 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||||| ||||||||||| |||||||| Sbjct 19058 TCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 19104 Score = 109 bits (120), Expect = 1e-18 Identities = 144/197 (73%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| || || || || || || || || || ||||| |||||| Sbjct 18002 TCCTTCTGAATGTTGTAGTCAGCAAGGGTACGGCCATCCTCCAACTGCTTTCCGGCGAAG 18061 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||||||| || || |||||| ||||| || || ||||| || || || || ||| Sbjct 18062 ATCAGACGTTGCTG---GTCTGGGGGAATTCCCTCCTTGTCCTGAATCTTAGCCTTAACG 18118 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || ||| ||| || ||||| ||||| |||||||| || || ||| Sbjct 18119 TTGTCGATTGTGTCTGAGCT---TTCCACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTC 18175 Query 288457 TTGACGAATATCTGCAT 288473 ||||| || |||||||| Sbjct 18176 TTGACAAAGATCTGCAT 18192 Score = 107 bits (118), Expect = 5e-18 Identities = 169/241 (70%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 288236 TTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATAT 288295 |||| | || ||||| ||||| | || || || |||| || || || || || | Sbjct 17727 TTCAGAAATCCCCACCACGGAGACGGAGAACAAGGTGAAGGGTAGACTCCTTCTGAATGT 17786 Query 288296 TATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTT 288355 | || || || || ||||| ||||| || ||||| || ||||| ||||| |||||||| | Sbjct 17787 TGTAATCAGCAAGAGTGCGACCGTCCTCCAATTGCTTCCCTGCAAAGATGAGACGCTGCT 17846 Query 288356 GAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-- 288413 | |||||| ||||| || ||||||||||| || || || || || || | || Sbjct 17847 GGTCTGGTGGGATGCCTTCCTTGTCCTGGATTTTAGCCTTTACATTATCAATTGTGTCAG 17906 Query 288414 -GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA 288472 |||| || || || | ||||| || || || || || ||||| ||||| || |||| Sbjct 17907 AGCTC---TCCACCTCCAAAGTGATGGTTTTGCCCGTAAGGGTCTTCACGAAGATTTGCA 17963 Query 288473 T 288473 | Sbjct 17964 T 17964 >seq115941 Length=36387 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 12/198 (6%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||||||||||||||| || ||||| |||||||| | || ||||| ||||| Sbjct 5613 TTCCTTTTGGATATTATAGTCGGCCAGGGTGCGACCGTCTTCGAGCTGCTTTCCAGCGAA 5672 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| || ||||||| || || || || || ||||| || || || || Sbjct 5673 AATCAGCCTCTGCTG---ATCTGGGGGAATCCCCTCCTTGTCTTGGATCTTAGCCTTGAC 5729 Query 288399 GTTTTCTATAGAATCGCTCGA---TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 || ||||| | ||| ||| || || || || ||||| ||||| ||||| || || Sbjct 5730 ATTGTCTATGGTATC---CGAACTCTCGACCTCTAGAGTGATGGTCTTACCGGTTAGGGT 5786 Query 288456 CTTGACGAATATCTGCAT 288473 || ||||| || ||||| Sbjct 5787 TTTCACGAAGATTTGCAT 5804 Score = 109 bits (120), Expect = 1e-18 Identities = 144/197 (73%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| ||||| || || || || || | ||| ||||| |||||| Sbjct 5386 TCCTTTTGGATGTTGTAGTCTGCGAGTGTCCGGCCATCCTCAAGTTGCTTTCCAGCGAAG 5445 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| || |||||| || || || ||||| || || || ||||||||| Sbjct 5446 ATCAACCTCTGCTGG---TCTGGGGGAATGCCCTCCTTATCTTGAATCTTAGCTTTCACG 5502 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || |||| || || || | ||||| ||||| ||||| ||||| Sbjct 5503 TTGTCGATGGTGTCCGAGCTC---TCGACCTCCAAAGTGATGGTCTTTCCGGTGAGAGTT 5559 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| || ||||| Sbjct 5560 TTGACGAAGATTTGCAT 5576 >seq108749 Length=27216 Score = 95.1 bits (104), Expect = 3e-14 Identities = 178/260 (68%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 325394 TTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTC--ACGATGGTCCCTTGCAGAG 325451 ||||||||||| || || |||||||||||||| | ||| | |||||| || ||| Sbjct 1435 TTGATGTTATTACTACCCACATAATCCTGTGCCA--TTCCAATGATGGTACCGGCAAGAC 1378 Query 325452 ATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCT 325511 || || |||||||||||||| ||| || | || ||||| ||||| ||||||| Sbjct 1377 TCGCCTCACCATGGTGATAGGCTGAATGTTCAGATACATAACCAGAAAACTGAGCAACCT 1318 Query 325512 TCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTT 325571 | | || | || || | |||||||| || | | | |||| |||| ||| | Sbjct 1317 TTGCTTCTTTTACAAAGTTCCTCTTGAAAGAACAAAAGAGGATCTTCCTTTGACCAGGCT 1258 Query 325572 TGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAA 325631 | | |||||||| | || |||||| | || ||||| | || ||||| |||| Sbjct 1257 TTAGGCCATCAACCATTGAAGGAATGGACCTTTGTAGATCAGCCAAAGAAAACAATATAA 1198 Query 325632 GTTCCTTGTCGATGAAGTCG 325651 ||||||||| | |||||| Sbjct 1197 GTTCCTTGTGAACAAAGTCG 1178 >seq86116 Length=13258 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| ||||||||||| | || ||||| || || | || || || || || Sbjct 2971 TCCTTCTGGATGTTATAGTCGGCCAAGGTTCGTCCATCCTCGAGCTGCTTGCCAGCAAAA 3030 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | || || | ||||| || || || |||||||| || |||||||| || Sbjct 3031 ATGAGCCTTTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATCTTAGCTTTCACATTG 3090 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| ||| ||||| | || || || |||||||| || ||||| || Sbjct 3091 TCAATTGTATCGGAACTTTCGACTTCCAAAGTAATGGTTTTCCCGGTAAGGGTCTTCACA 3150 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 3151 AAAATTTGCAT 3161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177652115078728