Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq109206 98.7 2e-15 seq108749 95.1 3e-14 >seq109206 Length=27697 Score = 98.7 bits (108), Expect = 2e-15 Identities = 348/535 (65%), Gaps = 13/535 (2%) Strand=Plus/Minus Query 243210 TTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTG 243269 |||| |||||||||| | |||||| || || ||||| | ||||| || ||| Sbjct 8247 TTTC-ACGCCATCGAGACCATTCCTTGTGTGGCCAAGAAGGCTCAGTGGGCCATGAGGTG 8189 Query 243270 GCTAGAACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTAT 243329 | | || | |||| || || ||||| | |||| | | ||||| || || || Sbjct 8188 GATCGACGGCTCAGAATCTTTCGCGGAGCGGTTGATCGCGTTCGCCTGCGTCGAGGGGAT 8129 Query 243330 TCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGG 243389 | || ||||| || |||||||| || |||||||| ||| || ||||||| || Sbjct 8128 CTTCTTCTCCGGAAGCTTCTGCGCGATATTTTGGCTAAAGAAACGCGGGTTGATGCCGGG 8069 Query 243390 CCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTG 243448 ||| | ||||||||||| || || || || || | ||| | |||| ||| Sbjct 8068 TCTCACGTTCTCTAACGAGTTGATATCGCGAGATGAAGGGTTACACTGCGATTTCGCGTG 8009 Query 243449 AGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGA--AACG-GTCAAACAAATCA 243505 | || || | ||| | ||| ||| | ||| | || |||| ||||| Sbjct 8008 ----TTTGCTTTACACGCTTCTGAAGAAGAAGCTGAGCGAGGAGCGAGTCAGGGGAATCA 7953 Query 243506 TCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTA 243565 || || || ||||| | ||| | ||| ||| | || || ||| | || || | | Sbjct 7952 TCCGCGATGCCGTTGATATCGAGAGGGAGTTCGTCTGTGATGCTCTGCCTTGTGCGTTGG 7893 Query 243566 TTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT--TT 243623 | || |||||| ||| || ||| | |||| ||||| ||||| || || || ||| | Sbjct 7892 TGGGTATGAACGGTGATCTTATGTGCAAGTATATCGAGTTCGTGGCTGATCG-ATTGATG 7834 Query 243624 CATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCT 243683 || ||| | ||||| | || | ||||| || |||||||||||| | |||||||| Sbjct 7833 GAT-GCGTTGGGTTACGCCAAGATCTACAATGCCCAGAACCCCTTTGATTGGATGGAGCT 7775 Query 243684 CATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || ||| | || || || || |||||||| || ||| | || | || || ||| Sbjct 7774 GATATCGTTGCAGGGTAAGACCAACTTCTTTGAGAAGAGGGTTGGAGAGTACCAA 7720 >seq108749 Length=27216 Score = 95.1 bits (104), Expect = 3e-14 Identities = 178/260 (68%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 297515 TTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTC--ACGATGGTCCCTTGCAGAG 297572 ||||||||||| || || |||||||||||||| | ||| | |||||| || ||| Sbjct 1435 TTGATGTTATTACTACCCACATAATCCTGTGCCA--TTCCAATGATGGTACCGGCAAGAC 1378 Query 297573 ATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCT 297632 || || |||||||||||||| ||| || | || ||||| ||||| ||||||| Sbjct 1377 TCGCCTCACCATGGTGATAGGCTGAATGTTCAGATACATAACCAGAAAACTGAGCAACCT 1318 Query 297633 TCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTT 297692 | | || | || || | |||||||| || | | | |||| |||| ||| | Sbjct 1317 TTGCTTCTTTTACAAAGTTCCTCTTGAAAGAACAAAAGAGGATCTTCCTTTGACCAGGCT 1258 Query 297693 TGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAA 297752 | | |||||||| | || |||||| | || ||||| | || ||||| |||| Sbjct 1257 TTAGGCCATCAACCATTGAAGGAATGGACCTTTGTAGATCAGCCAAAGAAAACAATATAA 1198 Query 297753 GTTCCTTGTCGATGAAGTCG 297772 ||||||||| | |||||| Sbjct 1197 GTTCCTTGTGAACAAAGTCG 1178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101008028010600