Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq63231 120 4e-22 seq109206 111 2e-19 seq124973 107 2e-18 >seq63231 Length=5017 Score = 120 bits (132), Expect = 4e-22 Identities = 229/326 (70%), Gaps = 16/326 (5%) Strand=Plus/Plus Query 10834 GCGGTTCGTCGCCGCGATGACAACGATGCC--CGTCTCGTTATCAAAGCCATCCATCTCA 10891 |||||| || ||||| ||||| | |||||| ||| || || || ||||| ||||||||| Sbjct 3609 GCGGTTGGTTGCCGCAATGACGATGATGCCATCGT-TCATT-TCGAAGCCGTCCATCTCA 3666 Query 10892 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCAC 10949 || ||||| || | ||| || || || ||||||| || || ||| ||||| | Sbjct 3667 ACCAGCAGTTGGTTAAGGGTCTGCTCACGCTCATCATGACCGC-CAC-CCATGCCCGCGC 3724 Query 10950 TGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGT---TGATTTT 11006 || || || || ||||| |||||||||||||| | ||| || || || |||| Sbjct 3725 CACGATGGCGGCCAACTGCGTCGATTTCATCGATGAAGATGATGCATGGCGCATGCTTTT 3784 Query 11007 CACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCA 11066 | || ||| || ||||| || || | ||||||||||||| ||||||||||| | Sbjct 3785 TA---GCCTGTTCGAACATATCGCGAACACGGCTGGCACCGACACCGACAAACATTTCGA 3841 Query 11067 CAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGG 11125 | |||| | | ||||| || | || ||| || || |||| ||| || || || || | Sbjct 3842 CGAAATCAGAGCCGGAA-ATGGTGAAGAAAGGCACCTTGGCTTCGCCGGCAATCGCCTTG 3900 Query 11126 GCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || || | ||| || || || || || Sbjct 3901 GCCAGCAAGGTTTTACCGGTACCCGG 3926 >seq109206 Length=27697 Score = 111 bits (122), Expect = 2e-19 Identities = 374/568 (66%), Gaps = 17/568 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCC 125815 ||| || ||||||| |||||| |||||||| ||||| || | ||| ||||| |||| Sbjct 7723 GTACTCTCCAACCCTCTTCTCAAAGAAGTTGGTCTTACCCTGCAAC--GATATCAGCTCC 7780 Query 125816 ATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC--ACCCCAATCTGTTTGAGGA 125873 || ||||||| ||||||| | || | || ||||| | ||||| | | | | Sbjct 7781 ATCCAATCAAAGGGGTTCTGGGCATTGTAGATC-TTGGCGTAACCCAA-CGCATCCATCA 7838 Query 125874 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 125933 ||||| | ||| |||| || |||| |||| ||| ||||||||| | | Sbjct 7839 ATCGATCAGCCACGAACTCGATATACTTGCACATAAGATCACCGTTCATACCCACCAACG 7898 Query 125934 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGG 125993 ||| || || || || ||| |||| || |||| || || ||||| || || | ||| Sbjct 7899 CACAAGGCAGAGCATCACAGACGAACTCCCTCTCGATATCAACGGCATCGCGGATGATTC 7958 Query 125994 CG-TGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAA 126050 | ||| | | ||| | | ||| | | || || | | || | || |||| || Sbjct 7959 CCCTGACTCGC-TCCTCGCTCAGCT-TCTTCTTCAGAAGCGTGTAAAGCAAACACGCGAA 8016 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || ||| | || || || || || || | || || ||||| || || |||| Sbjct 8017 A-TCGCAGTGTAACCCTTCATCTCGCGATATCAACTCGTTAGAGAACGTGAGACCCGGCA 8075 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 | | || || ||||| | ||| || ||||| || || || ||||||||||| |||| Sbjct 8076 TCAACCCGCGTTTCTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCT 8135 Query 126171 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACT 126230 | || || |||||||| | | ||||| || || || || ||| | |||| Sbjct 8136 CGACGCAGGCGAACGCGATCAACCGCTCCGCGAAAGATTCTGA---GCCGTCGATCCACC 8192 Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTT 126290 |||| |||||||| ||||| || | | ||| || | ||||| ||| || | |||||| Sbjct 8193 TCATGGCCCACTGAGCCTTCTTGGCCACACAAGGAATGGTCTCGATGGCGTGAAAGAGGC 8252 Query 126291 CCTTCTTTTCTGATGGATCTTTGATGTA 126318 ||||| || | || ||||| ||||| Sbjct 8253 GGTTCTTCTCAGCCGGGTCTTTAATGTA 8280 >seq124973 Length=53790 Score = 107 bits (118), Expect = 2e-18 Identities = 250/372 (67%), Gaps = 4/372 (1%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||| ||||| || || || ||||| || || | ||||||||| | Sbjct 43347 AAACCCATCCATCTCTGTCAATAGCTGGTTAATGGTCTGCTCTCTCTCATCATTCCCACC 43406 Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 | ||| || | | ||| | || || || ||||||||||| || || || || || Sbjct 43407 TCCAAGACCAGCCCCTCTTTGTCTCCCAACTGCATCAATTTCATCTATAAACACAATGCA 43466 Query 10996 CGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 || || |||| || ||| ||||| | ||| ||||||| ||||| || || | Sbjct 43467 -GGGTGCTTTTGACTTGGCCTTCTCAAACAAATCCCGGACTCGAGACGCACCAACTCCAA 43525 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114 |||||| ||||||||| | | || | ||| || || || ||| | |||||| | Sbjct 43526 CAAACAATTCCACAAACTCTGAAGCTGCACAAGAGAAAAACGGCACGCCAGCTTCACCAG 43585 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCAC 11174 | | ||||| || | |||||||| || || |||||| || | |||| | |||| | Sbjct 43586 CCACTGCTCGAGCCAAAAGGGTCTTTCCAGTACCAGGTGGTCCAACAAGAA-GACACCCC 43644 Query 11175 -GTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATT 11233 ||||||| | || ||| | || ||| || || | || | ||| || || | Sbjct 43645 TTTGGGATCTTAGCTCCAAGTGCAGTGTACTTATCTGGGTTCTTCAAGAAATCAACCACC 43704 Query 11234 TCTTCCAATTCA 11245 |||| ||||||| Sbjct 43705 TCTTGCAATTCA 43716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596364412306080