Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_010342.1 Length=39245 Score E Sequences producing significant alignments: (Bits) Value seq98467 260 3e-65 seq124121 206 7e-49 >seq98467 Length=19475 Score = 260 bits (288), Expect = 3e-65 Identities = 383/536 (71%), Gaps = 12/536 (2%) Strand=Plus/Plus Query 15014 GCGGCGCAGGGCAACGTGTTCGTTGCGCCCTCGGTGCATGCGATCGGCTGC-CTGGCGGC 15072 |||||| || ||||| ||| | ||||| ||| | || |||| | || ||||| Sbjct 6043 GCGGCGAAGAAAAACGTATTCCTCGCGCCGTCGTCCCTGGCCATCG-CGGCACTGGCCAA 6101 Query 15073 GGTGCAGCCGTGGCAAAGCCCCGGCAACCAGGGCGTGTTGATCCAGGGCGTCGCGCGCCA 15132 ||| ||| ||| | || || |||||||||| ||| | ||| ||| | ||| Sbjct 6102 GGTCAAGCAATGGGAGAGTCCAGGCAACCAGGTGACGTTCGCCGAGGACGTTTCCCGCGT 6161 Query 15133 CGTGGATTACAACATTCTCGACAAGTCGACTGATGGCGACCTGCTCAACCGCTACGGCAT 15192 ||| || |||||||| ||||||| || || || |||||||||||||||||||||||| | Sbjct 6162 CGTCGAGTACAACATCCTCGACACCTCCACCGAAGGCGACCTGCTCAACCGCTACGGCGT 6221 Query 15193 CAGCTACTACGCGCGCACCAGCCTGGGCGGGTTCTCGCTGATCGGCAACCGCACGGTGAC 15252 ||||||||||| ||||||| || ||||| ||||||||| | || ||||| | | || Sbjct 6222 GAGCTACTACGCCCGCACCATTCTCGGCGGCTTCTCGCTGCTGGGTAACCGTTCCATCAC 6281 Query 15253 CGGCGAGTTTATCTCGCACGTAGGCCTTGAAGACGCCATCGGTCGCAAGATCGTC--GGC 15310 |||| |||| ||| |||| ||||| |||||||| ||| | |||||| | ||| ||| Sbjct 6282 CGGCAAGTTCATCAGCTACGTCGGCCTCGAAGACGCGATCAGCCGCAAGCTGGTCAAGGC 6341 Query 15311 GCGTCGCAGAAGGCCATGGCGCAGAACTTGACCAAGAGCTTCATGGAGCAGGAGGT---G 15367 || ||||| |||||||| ||||| | |||||| ||||||||| |||||||| | Sbjct 6342 CGGT--CAGAAAGCCATGGCCAAGAACCTCACCAAGTCCTTCATGGACCAGGAGGTCAAG 6399 Query 15368 CGCAAGGTTGATGCGTTCGTTCAGGATCAGGTTGCTGCTGAGATCATCCCTGGTGGTCGT 15427 |||| | | | | | || | ||| || | || | |||||| || || | Sbjct 6400 CGCA---TCAACGACTGGCTGCAAACCCTGGTCGCCGACGAAACCATCCCCGGCGGCAGC 6456 Query 15428 GTCTATCTGCATCCTGACCTCAACACGGTCGAGCGCTATAAAAACGGTAGCTGGTACATC 15487 || || ||||| || || | |||| |||||| || || ||||| | |||| |||| Sbjct 6457 GTGTACCTGCACCCGGAATTGAACAGTGTCGAGAAGTACAAGAACGGCACTTGGTTCATC 6516 Query 15488 GTCATCGAGTACGGCCGCTATTCCCCCAATGAGCACATGATCTTCCACATCAATGC 15543 |||||||| ||||||||||| | || || || |||||||| | || ||||||| Sbjct 6517 GTCATCGACTACGGCCGCTACGCGCCGAACGAACACATGATTTATCAACTCAATGC 6572 Score = 86.0 bits (94), Expect = 2e-12 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 16653 CGTGCCGAGTTCATCACTGCTAAATGCACGGGTTTAATTCCTCACGA-CTTACACCAGCT 16711 || |||||||||||||| ||| | |||| || || || | ||| ||| | ||| || Sbjct 7676 CGCGCCGAGTTCATCACCGCTCATTGCAGCGGCTTGATGATCCCCGATCTTGC-CCATCT 7734 Query 16712 CACTGTTCCCGATTGGAACACGCTGCAGGAGCGTGTGAATCATTTTTTGAACGAAACGGC 16771 ||| || || || |||| | || |||||||| | | ||||||| || || |||| Sbjct 7735 CACCGTACCTGACTGGACCGAACTACAGGAGCGCATCGACGATTTTTTAAATCAACCGGC 7794 Query 16772 CGACTTCTTTC-CATCAACGACATCGACGTCTTAAGCGACGTTATTCCGCTGGTTTACCA 16830 |||||||||| || | |||||||||||| | ||| || | |||||||||||| Sbjct 7795 GGACTTCTTTCGCAAC-GCGACATCGACGTGATCCTCGATGTGGTGCCGCTGGTTTACTC 7853 Query 16831 GGTAAGCGAG 16840 ||| || ||| Sbjct 7854 GGTCAGTGAG 7863 Score = 82.4 bits (90), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 8/124 (6%) Strand=Plus/Plus Query 9426 ATCAAGCAAATGCTGGCGTGGTGGGCCGAGGGCAGCAACCTGGATGCCAAGGTTGCTGAC 9485 |||||||| ||||||||||||||||||| |||||||||||||| || | || ||| Sbjct 2328 ATCAAGCAGATGCTGGCGTGGTGGGCCGCCGGCAGCAACCTGGACGCACGCCTGGCCGAC 2387 Query 9486 CTGGGCCTGCAGCGGCA----GACGATCACCGAAGGCGACCCGAATGCGTTCCCTCCGGT 9541 |||||||| |||| || ||||| | ||||||||| |||||||| || || Sbjct 2388 ATGGGCCTGGAGCGTCAAGTGCTCGATCCC----GGCGACCCGGCGGCGTTCCCCCCCGT 2443 Query 9542 ACCG 9545 ||| Sbjct 2444 GCCG 2447 >seq124121 Length=49848 Score = 206 bits (228), Expect = 7e-49 Identities = 459/676 (68%), Gaps = 31/676 (5%) Strand=Plus/Plus Query 21285 CCATTCATTCAGTGGATGGGCGGCAAGCGCCGCCTGGCTAAACATATCCTGCCGAACTTC 21344 ||| |||| | |||||||||||||| ||||||||||| | | || | ||| ||| Sbjct 39784 CCAATCATCCCTTGGATGGGCGGCAAACGCCGCCTGGCCGACCGCCTCATCCCGCTATTC 39843 Query 21345 CCTGACCACCAGTGCTACGTTGAGCCCTTCGCGGGCGGCGCGGCGCTGTTCTTCAT--GA 21402 || |||| |||||||||| || |||||| ||| |||| || |||||||| | | Sbjct 39844 CCACCCCACGAGTGCTACGTCGAAGTCTTCGCCGGCAGCGCTGCCTTGTTCTTCCTCCGC 39903 Query 21403 AGCAACCCAGCAAA-GTGGAGGTGATCAACGACACCAACAGCGACCTGGTCAACTTGTAC 21461 | | || ||| || || || ||||||||| |||| |||||||||| | ||||| Sbjct 39904 CCCCAACCCGCACCTGTTGAAGTCCTCAACGACATCAACGGCGACCTGGTATGCCTGTAC 39963 Query 21462 CGGGTGGTGCAGCACCACCTGGAGGAGTTCGTGCGCCAGTTCAAGTGGGCGCTGGTCTCG 21521 || || || ||| | ||| |||| |||||||| ||||| |||||||||||||| ||| Sbjct 39964 CGCGTCGTACAGAATCACTTGGAAGAGTTCGTCCGCCAATTCAAGTGGGCGCTCAGCTCA 40023 Query 21522 CGTGAGATGTTCGCGTGGGAGAAGCTCAAGCACACCGACACGCTAACGGATATCCAGCGG 21581 || || | |||| |||| | ||| | | | | | || || || || || ||||| || Sbjct 40024 CGGCAGGTATTCGAGTGGCAAAAGATGACCCGCCCGGAAACCCTCACCGACATCCAACGT 40083 Query 21582 GCCGCGCGGTTCTACTACCTGCAGCAGCAGGGGTTTGGCGGGAAGGT---CAACTCGAAC 21638 || || || |||| |||||| || || || | ||| | | || || | | || | Sbjct 40084 GCGGCCCGATTCTTCTACCTCCAACACCATGCGTTCGCTGCCAAAGTCTCCGGCCAGACC 40143 Query 21639 TTTGGCATCTCGACCACGTCTGGCCCTGGGCTTAACCTGCTGCGGATCGAGGAGAACC-- 21696 || || | |||| || | ||| | | | || ||| | |||||||||||||||| Sbjct 40144 TTCGGTACGGCGACAACAGC-GGCGC--CGATCAATCTGTTACGGATCGAGGAGAACCTT 40200 Query 21697 TCAGC--CAGGCGCACTTGCGGCTCTCGCGCGTGTTCGTTGAGAACATG----GACTGGA 21750 || || || | ||| |||||| | | | ||| || ||| || | || || Sbjct 40201 TCCGCCGCATG-GCA---GCGGCTGGCCGGAACCTACGTGGAAAACCTGCCATGGCTCGA 40256 Query 21751 AAGCGGTCATGAAGCGCTACGACCGGCCGCACACGTTGCACTATCTCGACCCGCCGTATT 21810 ||| | | |||||||||||||| || || || ||||| | ||||| ||||| | Sbjct 40257 CTGCG----TCCAACGCTACGACCGGCCACATACCTTTCACTACATGGACCCACCGTACT 40312 Query 21811 GGGCGACCGCTGGCTATGATTGCGAGTTCCCGTTCGAGGAGTATGAGGCGATGGCC--AC 21868 || | ||| ||||| | | ||| || || || || | || ||| ||||||| | Sbjct 40313 GGAAGGTCGCAGGCTACGGTGTCGATTTTCCCTTTGATCAATACGAGCAGATGGCCGAAT 40372 Query 21869 GCTTGCGCGGGAGGTGC-AGGGGAAGGTGATCATCTCGATCAACGATCACCCTGACATAC 21927 | ||||| |||| |||||| |||||| || |||||||| ||||| || || | Sbjct 40373 TCATGCGC---CAGTGCGAGGGGAGGGTGATGGTCAGTATCAACGACCACCCGGATATCC 40429 Query 21928 GCCAGGTGTTCGACGG 21943 | | ||| || || || Sbjct 40430 GGCGGGTATTTGATGG 40445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125265028511784