Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq98467 250 1e-61 seq43102 116 2e-21 >seq98467 Length=19475 Score = 250 bits (276), Expect = 1e-61 Identities = 558/837 (67%), Gaps = 3/837 (0%) Strand=Plus/Plus Query 65913 ATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGC 65972 ||| |||| ||||| | | ||||||| ||| |||||||| || || || | ||| Sbjct 12095 ATTTCCACGGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGC 12154 Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || | || || |||||||||||||| ||||| || || | || || ||| | | Sbjct 12155 CGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTG 12214 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTC 66092 | ||| | || ||||| || | || | || | | |||||||||| || | || Sbjct 12215 ATTGCCCAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTG 12274 Query 66093 GACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCA 66152 |||||||||||||||| | || || | || ||| | || ||||| ||||| Sbjct 12275 GACCCTGAGTACGCCGGCAAATTGGGCGTCAACGTTGACGACCTGCTGGTTTCCCAGCCG 12334 Query 66153 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCC 66212 ||||| || ||||| |||||||| ||| ||| | || || || || | | Sbjct 12335 GACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCGAC 12394 Query 66213 ATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATC 66272 | ||||| || ||||| ||||| ||||||||||| ||| || ||||||| || || Sbjct 12395 GTGATCGTGGTCGACTCCGTGGCCGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATG 12454 Query 66273 GGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACC 66332 || ||| |||||| |||||||| ||||| |||||||| ||||| |||| || | ||| Sbjct 12455 GGTGACATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACC 12514 Query 66333 GGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATC 66392 || | || | | ||||| || | | | || ||| | || ||||||| Sbjct 12515 GGTAACATCAAGAACGCCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGAAGATC 12574 Query 66393 GGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTAC 66452 ||| || | | ||||| || ||||||||||||||||| || ||| |||||| Sbjct 12575 GGCGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCTAC 12631 Query 66453 GCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTC 66512 || ||||| ||| |||| ||||| | | || | | | ||| ||||| || |||| ||| Sbjct 12632 GCTTCGGTCCGTTTGGACATCCGCCGTACCGGCGCGGTGAAAGAAGGTGACGAGGTTGTA 12691 Query 66513 GGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCT 66572 || | || ||||| || || || |||||||| |||| || || ||||||||| Sbjct 12692 GGTAGTGAAACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCCCCGCCTTTCCGCCAGGCC 12751 Query 66573 GAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGGCC 66632 ||||| || |||||||| ||||||| | || | | || | ||||| ||| Sbjct 12752 GAGTTCCAGATTCTCTACGGCAAGGGCATCTACCTGAACGGCGAGATGATCGACCTGGGT 12811 Query 66633 GTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATC 66692 || | || || || |||| || || || |||| ||| | || || || Sbjct 12812 GTGCTGCACGGTTTCGTCGAGAAATCCGGTGCATGGTATGCCTACAACGGCAGCAAAATT 12871 Query 66693 GGCCAGGGCAAGCCCAAGACCGTGCAGTGGCTGAAGGACAACCCGGACGTCGCCGCC 66749 ||||| |||||| |||| | | ||| ||| ||||||||||| |||| ||| Sbjct 12872 GGCCAAGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGATATCGCTGCC 12928 >seq43102 Length=2767 Score = 116 bits (128), Expect = 2e-21 Identities = 233/344 (68%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 66417 GAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGC 66476 ||||||||||| || || || || ||| ||||||||||||||||| | || | ||| Sbjct 810 GAGACCACCACGGGCGGCAACGCCCTGAAGTTCTACGCCTCGGTGCGCCTCGACATACGC 751 Query 66477 AGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTT 66536 | ||| | ||| |||||| |||| ||||| ||||||||| ||||| ||||| Sbjct 750 CGCATCTCGACCCTGAAGGATCGCGACGAGGCGATCGGCAACCAGGTCCGCGTCAAGGTG 691 Query 66537 GTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAG 66596 || ||||||||| | ||||| ||| | |||| ||||| |||| | | ||||||| Sbjct 690 GTGAAGAACAAGGTCGCGCCGCCGTTCAAGCAGGTCGAGTTCGACATCATGTTCGGCGAG 631 Query 66597 GGCATTTCCCGCGAGGCTGAACTCCTCGACATGGCCGTTTCCCGAGGGCTCATCAAGAAG 66656 ||| | || | | ||| || ||||| | | ||| || || || ||||| Sbjct 630 GGCGTGTCGAAGGTCGGTGAGCTGATCGACCTCGGCGTGAAGGCTGGCATCGTCGAGAAG 571 Query 66657 TCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATCGGCCAGGGCAAGCCCAAGACCGTG 66716 || || ||||||||| ||| | || | ||||||||||| | | ||| || | Sbjct 570 TCAGGCGCCTGGTTCTCGTATAACAGCCAGCGCCTCGGCCAGGGC---CGCGAGAACGCG 514 Query 66717 CAG---TGGCTGAAGGACAACCCGGACGTCGCCGCCTCCATCGA 66757 || | ||| ||||||||| | |||||||| ||||| Sbjct 513 AAGGGCTTCCTGCGCGACAACCCGAAGATCGCCGCCGAGATCGA 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242078919112592