Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq26752 149 6e-31 >seq26752 Length=1779 Score = 149 bits (164), Expect = 6e-31 Identities = 310/454 (68%), Gaps = 16/454 (4%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| || || ||| || || || ||| || || ||| Sbjct 464 AACTACCAATACTTTGGCTTCAAGACGCTCGAGCGCTCATATCTTCTCCGCATTGACGGC 405 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | ||| ||||| |||| || || || | ||||| || || |||| || |||||| || Sbjct 404 AAAGTTGCCGAGAGACCACAGCACATGATCATGCGTGTTGCTGTCGGCATCCACGGCGAC 345 Query 93835 GACAT----GCCG-AATGTTTTGCGGG-CTTTCAGAGACATGCGGGACAAGAGGTATAC- 93887 ||||| |||| ||| || | | | || ||||| ||||| | || Sbjct 344 GACATCGAGGCCGCAAT------CGAGACCTACAACTACATGTCCAACAAGTACTTCACA 291 Query 93888 CATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTT 93947 |||| || |||| || || |||| ||| || ||||| | ||||| || | || || || Sbjct 290 CATG-CCTCCCCTACGCTCTTCAGCGCAGGTACCCCTCAGGCACAGCTGGCGTCTTGCTT 232 Query 93948 CCTGAT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTG 94006 ||| || ||| | |||| ||| ||| || || | ||| | |||||| ||| | Sbjct 231 CCTCATCGAC-ATGAAGGATGACAGCATTGAGGGTATCTACGATACTCTCAAGATCTGCG 173 Query 94007 CGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGG 94066 | | ||||| || |||| || || || || ||| ||| | | ||||||| | Sbjct 172 CCATGATCTCCAAGAACGCTGGTGGTATTGGTCTCAACACTCACCGCATTCGTGCCACTG 113 Query 94067 GTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCT 94126 | | ||||| | || ||||||||||| |||||||| ||||| || ||||| || |||| Sbjct 112 GCGCTTACATTGGTGGCACCAATGGCACTTCCAACGGTCTCGTGCCCATGCTTCGTGTCT 53 Query 94127 TCAACAACGCGGCGCGCTACGTGGACCAGGGTGG 94160 ||||||| | || |||||||| |||||||| || Sbjct 52 ACAACAACACCGCTCGCTACGTCGACCAGGGAGG 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493903963116960