Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq109206 107 2e-18 seq109654 95.1 1e-14 seq115941 89.7 5e-13 >seq109206 Length=27697 Score = 107 bits (118), Expect = 2e-18 Identities = 331/502 (66%), Gaps = 14/502 (3%) Strand=Plus/Minus Query 52340 CAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCG 52399 ||| |||||||||||||| |||| ||||||||| || | | | | | || ||||| Sbjct 8215 CAAGAAGGCTCAGTGGGCCATGAGGTGGATCGA---CGGCTCAGAATCTTTCGCGGAGCG 8159 Query 52400 CATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTT 52459 || | || |||||| |||||||| | || || ||||| ||||| ||| || || Sbjct 8158 GTTGATCGCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATATT 8099 Query 52460 TTACATTAA--AACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCG 52517 || | || |||| || | ||||| || || |||||| ||||||||||||||| Sbjct 8098 TTGGCTAAAGAAACGC--GGGTTGATGCCGGGTCTCACGTTCTCTAACGAGTTGATATCG 8041 Query 52518 CGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAA 52577 || || ||||| | ||| || || ||||| | | || | |||| ||| ||| Sbjct 8040 CGAGATGAAGGGTTACACTGCGATTTCGCGTG--TTTGCT-TTACACGCTTCTGA-AGAA 7985 Query 52578 AAATTGGATTCGGACACGA-TCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGA 52636 || || | ||| || | | || || || || || | |||||| | ||| Sbjct 7984 GAAGCTGAGCGAGGAGCGAGTCAGGGGAATCATCCGCGATGCCGTTGATATCGAGAGGGA 7925 Query 52637 GTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGA 52696 ||| | | || ||||| | | || |||| ||||||| | |||||| | Sbjct 7924 GTTCGTCTGTGATGCTCTGCCTTGTGCGTTGGTGGGTATGAACGGTGATCTTATGTGCAA 7865 Query 52697 GTACATCGAGTTTGTGGCGGATCGTCTGTTGG-TGCAGCTCGGGCAGCCAAAGTACTTCA 52755 ||| |||||||| ||||| ||||| || ||| ||| | | || | | ||| || || Sbjct 7864 GTATATCGAGTTCGTGGCTGATCGATTGATGGATGC-GTTGGGTTACGCCAAGATCTACA 7806 Query 52756 ACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTT 52815 | || | || || ||||| | ||| | || ||| | |||| ||||||||||| | Sbjct 7805 ATGCCCAGAACCCCTTTGATTGGATGGAGCTGATATCGTTGCAGGGTAAGACCAACTTCT 7746 Query 52816 TCGAGAAGCGAGTCGGCGAGTA 52837 | |||||| | || || ||||| Sbjct 7745 TTGAGAAGAGGGTTGGAGAGTA 7724 >seq109654 Length=28343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | |||||||| || |||||||||||| Sbjct 18194 CCTCCACGGAGACGAAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCA 18253 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| ||||| || | |||| |||||||| ||||| || || Sbjct 18254 AGGGTACGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGA 18313 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| |||||| || | | || | ||||||| ||| ||| Sbjct 18314 ATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATTGTGTCGGAGCTCTCGACC 18373 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || ||||| ||||| |||||||| Sbjct 18374 TCAAGGGTGATGGTCTTCCCGGTGAGGGTTTTCACAAATATCTGCAT 18420 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | || || || || || || || |||| | Sbjct 18683 GACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCTTCAAGCTGCTTTCCGGCA 18742 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||| ||||| || || || ||||| ||||| ||| || ||| | Sbjct 18743 AAGATCAACCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACG 18802 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| || || || |||| ||| | ||| || || |||| ||| || Sbjct 18803 TTGTCGATGGTGTCGGATGATTCGACTTCGAGCGTGATCGTCTTTCCGGTCAAAGTCTTA 18862 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 18863 ACGAAGATCTGCAT 18876 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | || | | | |||||||| ||||||||||| || Sbjct 17738 CCACCACGGAGACGGAGAACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 17797 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| | ||| || || | | |||| |||||||| ||||| || || Sbjct 17798 AGAGTGCGACCGTCCTCCAATTGCTTCCCTGCAAAGATGAGACGCTGCTGGTCTGGTGGG 17857 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| |||| | || | ||||| | ||||||| Sbjct 17858 ATGCCTTCCTTGTCCTGGATTTTAGCCTTTACATTATCAATTGTGTCAGAGCTCTCCACC 17917 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || || || || || || || ||||| Sbjct 17918 TCCAAAGTGATGGTTTTGCCCGTAAGGGTCTTCACGAAGATTTGCAT 17964 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || || ||||| ||| || || | || | || ||||| || || || | Sbjct 19139 GACTCCTTCTGGATATTGTAATCGGCCAGGGTTCTGCCA-TCTTCGAGCTGCTTTCCAGC 19197 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 |||| || | ||| ||||||||||| || || || ||||| ||| | || | ||| Sbjct 19198 GAAGATAAGCCTCTGCTGGTCCGGAGGGATCCCCTCCTTGTC-TTGAATCTTGGCCTTAA 19256 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||||| ||| ||||||| || | || ||||| || || ||| Sbjct 19257 CATTG-TCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTACCGGTTAGGGTT 19315 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 19316 TTGACGAAGATCTGCAT 19332 >seq115941 Length=36387 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | |||| ||| | | ||||||||||| |||||||| ||| Sbjct 4894 CCACCACGGAGACGAAGCACTAGATGGAGAGTGGACTCCTTTTGTATGTTGTAATCGGCA 4953 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | |||||||||||| || |||| | |||| || | ||| ||||| || || Sbjct 4954 AGTGTCCTTCCGTCCTCGAGTTGCTTTCCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGG 5013 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || || || ||| ||| || | |||| || | || |||| ||| || Sbjct 5014 ATACCCTCCTTATCTTGGATCTTTGCCTTGACATTG-TCAATAGTATCGGAGCTCTCAAC 5072 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || || || || || |||||||||||||| Sbjct 5073 CTCCAATGTTATTGTTTTCCCGGTAAGGGTCTTAACAAAAATCTGCAT 5120 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | | |||||||| ||||||||||| || Sbjct 5122 CCACCACGAAGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCG 5181 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | ||||| || || || || | |||| || ||||| ||||| || || Sbjct 5182 AGAGTTCTCCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGCCGCTGCTGGTCTGGGGGG 5241 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | ||| |||| || | |||||| | ||||| Sbjct 5242 ATGCCCTCCTTGTC-TTGAATCTTGGCTTTCACATTG-TCAATGGTGTCCGAGCTCTCCA 5299 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| ||||| || ||||| ||||| || ||||| Sbjct 5300 CCTCCAAAGTTATGGTTTTTCCAGTGAGGGTTTTGACAAAGATTTGCAT 5348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495440614278720