Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq103255 89.7 2e-13 >seq103255 Length=22703 Score = 89.7 bits (98), Expect = 2e-13 Identities = 198/287 (69%), Gaps = 10/287 (3%) Strand=Plus/Plus Query 125 GCCATCGCAATAGTGGCGTACACATCAGCCATCGCATCGTGGGCGTTGCTATGTTCAATA 184 |||| ||||||||||| ||| || | || |||||||| || | | ||| || ||| Sbjct 13092 GCCAGGGCAATAGTGGCTCGCACGTCGGACAGAGCATCGTGCGCCTGACCATGGTCGATA 13151 Query 185 CCATTCGCTTTGGTTAAATGCTCAAGGCGAAAGCTCGGTAGAC-CG-TCATCATTTTCAG 242 || || |||| ||| | |||| | | ||| || ||| || |||| | || | Sbjct 13152 CCGTTGGCTTCGGTCAGGCGCTCCA-GTTTGAGC---GT-GACGCGCCCATCCTGTTGCG 13206 Query 243 GCCAGTTTATTCCTTCCGGGCGCAGGGCATAGCAGGCACGCATAACATCCAGTAAATCCC 302 |||| | || ||||||||||| ||||| ||| | || || || || | | ||||| Sbjct 13207 GCCATTCAATGCCTTCCGGGCGTAGGGCGTAGGCCGTGCGAATCACGTCGATCAGATCCC 13266 Query 303 AGCGCGAGTTATCATGCTGCCAGCTC-CAGGCGTAAGGATCGTAGAAATTACGATAAAAA 361 |||| |||| | |||||| ||| | |||||||||||| ||||||| || || | Sbjct 13267 AGCGGCTGTTACCGCCCTGCCA-CTCACGTGCGTAAGGATCGAAGAAATTGCGGTACAGG 13325 Query 362 ACGTTGCGTGTGACTTCGTCGTCGAAACGCACATTGTTGTAGCCCAG 408 || ||| || | ||| ||||| || |||| ||||||| ||||| Sbjct 13326 CTGTAGCGCGTCATTTCATCGTCAAATCGCAAGGTGTTGTA-CCCAG 13371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198436137828408