Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_011373.1 Length=46872 Score E Sequences producing significant alignments: (Bits) Value seq25364 212 2e-50 seq27595 174 5e-39 seq8770 122 3e-23 seq81235 87.8 5e-13 seq37031 86.0 2e-12 >seq25364 Length=1633 Score = 212 bits (234), Expect = 2e-50 Identities = 292/403 (72%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 42163 TTCCGCATCCAAGGCGCTGCCGGCATCCGTCCGGCTTTC-GTCGCGGCCTGGAACCTCAT 42221 ||||||||||||||||| |||||| | ||| ||| || ||| ||| |||| Sbjct 668 TTCCGCATCCAAGGCGCAGCCGGCCTGAAGATGGCCTTCCGTAGCG-CCTACGACCTGTG 610 Query 42222 CCAGGGCCTGATGAAAGAAGCACAGGGTGGCTACGAGCTTGTCCTTCGCCCGCTCAAGTC 42281 |||| || ||| || | | || |||||||| ||||| || || | ||||| Sbjct 609 CCAGCAGCTTATGGGGGAGGGC---GCTGCGTACGAGCTGGTCCTGCGTCCCATGAAGTC 553 Query 42282 AAAGCGCTCTATCGAACAGAACAAGCGTTACTGGTCCCTTCTGCGCGAGCTGGCCGCCGT 42341 ||||| ||||| || ||||||||||| |||||| ||| ||||||||| | || || Sbjct 552 GAAGCGTTCTATTGAGCAGAACAAGCGCTACTGGCTCCTGCTGCGCGAGATCGCTGCGAC 493 Query 42342 CGCCTGGGTCGACAACCGCCAGTTCGACGATCAGGTCTGGCACGAGCAGTTCAAGCGCTG 42401 ||||||| | || |||||||||| ||| || |||||||||| ||||||||| Sbjct 492 CGCCTGGCTAAACGGCCGCCAGTTCAGCGACGAGACCTGGCACGAGTTCTTCAAGCGCAC 433 Query 42402 GTTCATCGGCTGCGAGGACGTGAAGTTGCCGGACGGCTCGACCGAGTTGCGCGGCATCAG 42461 |||||||||||||| || | |||| |||||| | |||||| | ||||||||||| Sbjct 432 CTTCATCGGCTGCGACGAGATCGCCATGCCCGACGGCACCACCGAGCTACGCGGCATCAG 373 Query 42462 CACGACGAAGCTGACCGTCGACGAGTTCGGAATCTACATGACCAAGATCGAAGCGTGGGC 42521 ||| |||||||||| ||||| |||||||| ||||||| | ||||| |||||| Sbjct 372 CACCACGAAGCTGAAGGTCGATGAGTTCGGCGACTACATGCTGCATATCGAGCAGTGGGC 313 Query 42522 CGCCGAGCAAGGGTGGCCGCTGATGATGCAGGAGGCCGCATGA 42564 || ||||| || | | ||| ||||| || |||| |||||| Sbjct 312 TGCTGAGCAGGGCT--TCCCTG-TGATGGAGAAGGCAGCATGA 273 >seq27595 Length=1905 Score = 174 bits (192), Expect = 5e-39 Identities = 374/556 (67%), Gaps = 11/556 (2%) Strand=Plus/Plus Query 32424 TCATGCTGCCACCCCCAGCACCTTTTCCATGCGCTCATCGAGCAGTTCGTAGAAGGTCTT 32483 |||||| || || ||||| || | |||||| ||||| |||||||||||||||| | Sbjct 985 TCATGCGGCTACTCCCAGAACGCGATTCATGCGTTCATCCAGCAGTTCGTAGAAGGAGAT 1044 Query 32484 TACTCGCTCGGACAGCTTGCGTATGTAGGCCTCATCACGGTGGACGCGCACCATGCAAAG 32543 || || | | |||| || | ||||| |||| | ||| || | | || Sbjct 1045 GACGCGGGCCTGGATCTTGGCGATCAGCTCGTCATCCCGGTACGCACGCTTCACGAACAG 1104 Query 32544 TGGCATGCCTGGCCAGTAGCCGAGGAAGTCGATCCACTCGCGCTCCGAAACCCAAAGCCC 32603 |||||||| |||||||||| || ||||||||||||||||||||| || ||||| || || Sbjct 1105 CGGCATGCCCGGCCAGTAGCTGATGAAGTCGATCCACTCGCGCTCGGATACCCATAGGCC 1164 Query 32604 CCCGTAGCACTGAGCCGCGTGCTCGGAAGGCAGCTCGCCTGCGATGATCACGCTCACCAG 32663 | | |||||| || ||| || || | |||||| |||| |||||| | ||| | Sbjct 1165 GGCCTGGCACTGGGCGATGTGTTCCTTGGGGATCTCGCCGGCGAGGATCACACCGACCTG 1224 Query 32664 CTTTTCCGGCACCTTGGTTTTCACCTCTATCAGGCCGTTGTCGCCGACTAGGCCATCCGG 32723 | |||| ||| | || | ||| | |||||||| ||||| | ||| || || Sbjct 1225 AAACTTGGGCAGCTTCGACTTGATCTCGACCAGGCCGTCAGTGCCGATCAAGCCGTCAGG 1284 Query 32724 CGAATAGCCAATTCCGTGGTTGAGAATGATGCCGACCGGCTGGATCTGATCTGGCTCGGT 32783 ||| ||||| || || |||||||| ||||| |||||| | | | || | | |||||| Sbjct 1285 CGAGTAGCCGATACCATGGTTGAGGATGATCCCGACCTGGTCGGTCCGGCATTCCTCGGT 1344 Query 32784 ATCTGTGCGCAGGCAGTACAGGTCGCGCACAACCGGCTCAAGCTTATGACCCCTGGCGCT 32843 ||| ||| || || | ||| | ||| |||| | || ||| || | || | Sbjct 1345 GTCT----GCA-----TAGAGCTTGCGGGCCACCAGCTCCATCTCATGGCCGCGTTCGGT 1395 Query 32844 GCTACCGTTACCACGCCACGGCTCGGCCTCTGCTCCGGTGATCCGCTCACCAATCAGGCG 32903 | | ||| || | ||| || || | || ||||| |||||||| ||||| | Sbjct 1396 GTGGCGGTTGCCGCCAAACGCGTCAGCAGACACACCCGTGATGCGCTCACCGATCAGCTG 1455 Query 32904 GTCCATGTATGTGAAGGCGCCAACGCCGAACCCTGCCTGGCCTTTGCCGTTAACCATCAA 32963 ||||||||| | | || || | ||||| || || || |||||||| |||| | | Sbjct 1456 GTCCATGTAGCTCAGTGCCTCAGCACCGAAGCCACGCTCTCCCTTGCCGTTGACCAGC-A 1514 Query 32964 CACATCCAA-TTCGGA 32978 | ||||| |||||| Sbjct 1515 GGCTTCCAACTTCGGA 1530 >seq8770 Length=1107 Score = 122 bits (134), Expect = 3e-23 Identities = 137/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 27289 GAACACCGTGAGCAACTACTTCCCCAAGGCTTGCGAGTCCGCCGGCGTGAGCGGCCTTAC 27348 ||||||||| |||||||||||||| || || |||| | ||||| ||| || |||| Sbjct 1070 GAACACCGTCAGCAACTACTTCCCGAAAGCCTGCGTCGCGGCCGGAGTGGAAGGA-TTAC 1012 Query 27349 -CTTCCACGACCTGCGCCATGAGGCCACATCTCGGCTGTTCGAACGCGGCTTTTCCATGA 27407 | | ||||| || || || ||||| || |||||||||||| || ||||| ||||| Sbjct 1011 GCCTTCACGATCTCCGGCACGAGGCGACGAGTCGGCTGTTCGAGCGAGGCTTCAACATGA 952 Query 27408 TGGAGGTCGCCGCGATCACCGGGCACAAGACACTGGCCATGCTCAAACGCTACACGCATC 27467 |||| || ||| | ||||| || |||||||| || |||||||| || | ||||| || | Sbjct 951 TGGAAGTGGCCTCCATCACTGGTCACAAGACCCTAGCCATGCTGAAGAGGTACACACACC 892 Query 27468 T 27468 | Sbjct 891 T 891 >seq81235 Length=11139 Score = 87.8 bits (96), Expect = 5e-13 Identities = 93/117 (79%), Gaps = 7/117 (6%) Strand=Plus/Plus Query 23879 GAAGAGGGAGGCGAACTGTACGCGGGTTGGCCGACCGGGGGT-AAGGCTCCCGGCACACC 23937 |||||||| ||| | |||||||||||||| |||||||| || || | ||||||| ||| Sbjct 7736 GAAGAGGGTGGC-AGCTGTACGCGGGTTGACCGACCGGTTGTCAACGAACCCGGCATACC 7794 Query 23938 CGAAGGTGTCCCACGCACA---GCC-CGCCATAA-AGCGAGGGCACaaaaaaaCGCC 23989 ||||||| |||| |||||| ||| || || || | | |||||||||||||||| Sbjct 7795 CGAAGGTATCCCGCGCACAACTGCCGCGACACAATACCTCAGGCACAAAAAAACGCC 7851 >seq37031 Length=2530 Score = 86.0 bits (94), Expect = 2e-12 Identities = 88/110 (80%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 23864 CATCTCTGCGACCAAGAAGAGGGAGGCGAACTGTACGCGGGTTGGCCGACCGGGGGT-AA 23922 |||| |||| | | ||| |||| ||||| |||| |||||||| || |||| || | || Sbjct 2312 CATCGCTGCTAA-ACGAAAAGGGTGGCGA-CTGTGCGCGGGTTAGCAGACCAGGAATCAA 2369 Query 23923 GGCTCCCGGCACACCCGAAGGTGTCCCACGCACAGCCCGCCATAAAGCGA 23972 || |||||| |||||||| ||| ||||||||||| ||||||||| |||| Sbjct 2370 GGAACCCGGCGCACCCGAAAGTGCCCCACGCACAG-CCGCCATAATGCGA 2418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149633033522608