Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq86116 120 2e-22 seq115941 114 9e-21 seq109654 91.5 1e-13 seq113932 84.2 2e-11 seq106905 84.2 2e-11 seq97232 84.2 2e-11 seq86460 84.2 2e-11 >seq86116 Length=13258 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || ||||| || |||||||||||| ||| | | |||| || Sbjct 3409 ACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAATCGGCAAGAGTACGGCCGTCCTCA 3468 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | ||||| | ||| ||||| ||| || ||||||||||| | Sbjct 3469 AGCTGCTTGCCAGCGAAAATCAATCTCTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGA 3528 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || || || ||| |||| || || ||||| |||||||| Sbjct 3529 ATCTTGGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCGACCTCCAAGGTGATGGTTTTT 3588 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| ||||| |||||||| Sbjct 3589 CCAGTAAGGGTTTTGACAAAGATTTGCAT 3617 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | | ||| || |||||||| || ||||| || ||||| |||||| Sbjct 3161 TGCCACCACGGAGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAATCGG 3220 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | || || | ||| || |||||| | ||||| | ||| ||||| | Sbjct 3221 CAAGGGTCCGGCCATCCTCGAGTTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGG 3280 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| || |||||||| ||| ||| || ||| | || || ||||| |||| | Sbjct 3281 GAATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTATCTGAGCTTTCCA 3340 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| |||||||| || || || || || ||||||||||||||| Sbjct 3341 CCTCAAGGGTGATGGTTTTCCCGGTGAGTGTCTTAACAAAAATTTGCATA 3390 >seq115941 Length=36387 Score = 114 bits (126), Expect = 9e-21 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || ||||||||||| ||| | || | || || ||||| Sbjct 4690 TGAAGGGTTGATTCCTTCTGGATGTTGTAATCCGCAAGAGTCCTGCCATCCTCCAATTGC 4749 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | ||||| | ||||||||| |||||||| |||||||| |||||| Sbjct 4750 TTCCCAGCAAAAATCAACCTCTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATTTTC 4809 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 |||||| | || || ||||| | || || || | ||| |||||||| || || Sbjct 4810 GCCTTTACATTGTCAATTGTATCAGAGCTCTCGACCTCGAGGGTGATGGTTTTTCCCGTA 4869 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||||||||| Sbjct 4870 AGGGTCTTCACAAAAATTTGCAT 4892 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || |||||||| || || || ||||||||||| |||| ||||| | || || Sbjct 5139 AACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCGAGAGTTCTCCCATCCTC 5198 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || |||||| | || | ||||| ||||| || || || |||||||| Sbjct 5199 AAGCTGCTTTCCAGCGAAGATAAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 5258 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| ||| ||| | || || || || | || || || || || |||||||| Sbjct 5259 AATCTTGGCTTTCACATTGTCAATGGTGTCCGAGCTCTCCACCTCCAAAGTTATGGTTTT 5318 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| ||||| ||||||||| Sbjct 5319 TCCAGTGAGGGTTTTGACAAAGATTTGCATA 5349 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||| ||| || || || || |||||||||||||||||| || | || |||| || Sbjct 4912 ACTAGATGGAGAGTGGACTCCTTTTGTATGTTGTAATCGGCAAGTGTCCTTCCGTCCTCG 4971 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || || || | || | | ||| ||||| ||| || || ||||| || Sbjct 4972 AGTTGCTTTCCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCCTCCTTATCTTGG 5031 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||| || ||| | || ||||||||| | || || || || || || ||||| Sbjct 5032 ATCTTTGC-CTTGACATTGTCAATAGTATCGGAGCTCTCAACCTCCAATGTTATTGTTTT 5090 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || |||||||| |||||| Sbjct 5091 CCCGGTAAGGGTCTTAACAAAAATCTGCATA 5121 >seq109654 Length=28343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||||| || || || ||||||||||| ||| | | |||| || ||||| Sbjct 17762 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGACCGTCCTCCAATTGC 17821 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | || | |||||| ||||| ||| || ||||||||||| ||||| Sbjct 17822 TTCCCTGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGGATTTTA 17881 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 |||||| | || || || || | || || || || || |||||||| || || Sbjct 17882 GCCTTTACATTATCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTTTGCCCGTA 17941 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||| Sbjct 17942 AGGGTCTTCACGAAGATTTGCAT 17964 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | |||| || | ||||||||| || || || || |||||||| ||| | Sbjct 18650 CCACCACGGAGCCTTAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCG 18709 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | ||||| | || || || || | ||||| | ||| ||||| ||| Sbjct 18710 AGGGTTCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 18769 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| ||| || | || || || ||| ||| || Sbjct 18770 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGATGATTCGACT 18829 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || || || || || |||| ||| || || || || |||||| Sbjct 18830 TCGAGCGTGATCGTCTTTCCGGTCAAAGTCTTAACGAAGATCTGCATA 18877 >seq113932 Length=32622 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || || || || || || || || || ||||||||||| ||| || ||| |||| || Sbjct 27622 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT-AGGGTTCGGCCGTCCTC 27564 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || || ||| | || | |||||| ||||| ||| || || |||||||| Sbjct 27563 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 27504 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| | || || || ||| | || || |||| ||| |||||||| Sbjct 27503 GATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTT 27444 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || ||||| || || || ||||| Sbjct 27443 ACCCGTTAGGGTTTTCACGAAGATCTGCAT 27414 >seq106905 Length=25706 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || || || || || || || || || ||||||||||| ||| || ||| |||| || Sbjct 9532 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT-AGGGTTCGGCCGTCCTC 9474 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || || ||| | || | |||||| ||||| ||| || || |||||||| Sbjct 9473 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 9414 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| | || || || ||| | || || |||| ||| |||||||| Sbjct 9413 GATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTT 9354 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || ||||| || || || ||||| Sbjct 9353 ACCCGTTAGGGTTTTCACGAAGATCTGCAT 9324 >seq97232 Length=18783 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAAT-CGCTGAGAATTCTCGCGTCTTC 15026 || || || || || || || || || |||||||||| |||| || ||| |||| || Sbjct 12306 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT-AGGGTTCGGCCGTCCTC 12364 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || || ||| | || | |||||| ||||| ||| || || |||||||| Sbjct 12365 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 12424 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| | || || || ||| | || || |||| ||| |||||||| Sbjct 12425 GATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTT 12484 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || ||||| || || || ||||| Sbjct 12485 ACCCGTTAGGGTTTTCACGAAGATCTGCAT 12514 >seq86460 Length=13305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || || || || || || || || || ||||||||||| ||| || ||| |||| || Sbjct 12068 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT-AGGGTTCGGCCGTCCTC 12010 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || || ||| | || | |||||| ||||| ||| || || |||||||| Sbjct 12009 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 11950 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| | || || || ||| | || || |||| ||| |||||||| Sbjct 11949 GATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTT 11890 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || ||||| || || || ||||| Sbjct 11889 ACCCGTTAGGGTTTTCACGAAGATCTGCAT 11860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356814972299660