Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq124121 214 5e-51 seq124742 89.7 1e-13 >seq124121 Length=49848 Score = 214 bits (236), Expect = 5e-51 Identities = 440/652 (67%), Gaps = 7/652 (1%) Strand=Plus/Plus Query 24791 CCAATCATTTCCTGGCCGGGCGGCAAGCGCCGCCTCCTGAAGCACCTCTATCCGCACTTC 24850 |||||||| | ||| ||||||||| |||||||| | | |||| |||| ||| Sbjct 39784 CCAATCATCCCTTGGATGGGCGGCAAACGCCGCCTGGCCGACCGCCTCATCCCGCTATTC 39843 Query 24851 CCGACCCACGACTGCTACGTCGAGGCATTCGCCGGCGGTGCCGCGTCGTTGCTTATGCGG 24910 || ||||||| ||||||||||| | ||||||||| | || || | ||| | | || Sbjct 39844 CCACCCCACGAGTGCTACGTCGAAGTCTTCGCCGGCAGCGCTGCCTTGTTCTTCCTCCGC 39903 Query 24911 CCGTACCCAGCACAGATGGAGGTGCTCAACGACATCAACGGCGAGCTGGTGTCCCTGTAC 24970 || | || |||| | || || |||||||||||||||||||| ||||| | ||||||| Sbjct 39904 CCCCAACCCGCACCTGTTGAAGTCCTCAACGACATCAACGGCGACCTGGTATGCCTGTAC 39963 Query 24971 CGCTGCGTGCGCCACCACCTGGATGAGTTCGTGCGCATGTTCCGCTGGTCCCTGGTCTCG 25030 ||| ||| | | ||| |||| |||||||| ||| ||| ||| | || ||| Sbjct 39964 CGCGTCGTACAGAATCACTTGGAAGAGTTCGTCCGCCAATTCAAGTGGGCGCTCAGCTCA 40023 Query 25031 CGACAGATGTTCGAGTGGGCACAGATGGAGCGCCCGGAGACGCTGACCGACATCCAGCGC 25090 || ||| | ||||||||| | ||||| |||||||| || || ||||||||||| || Sbjct 40024 CGGCAGGTATTCGAGTGGCAAAAGATGACCCGCCCGGAAACCCTCACCGACATCCAACGT 40083 Query 25091 GCAGCGCGGTTCTACTACCTGCAAAAGCTGGCATTCGGCGGCAAGGTGCAGGGGCAATCG 25150 || || || |||| |||||| ||| | | || |||| | ||| || || || | Sbjct 40084 GCGGCCCGATTCTTCTACCTCCAACACCATGCGTTCGCTGCCAAAGTCTCCGGCCAGACC 40143 Query 25151 TTCGGTGTGGTGACGGCTGGTGGGCCGCGATTGAACCTTCTGCGCATTGAAGAGGAACTG 25210 |||||| || ||| | | | |||| | || || | || || || ||| | || Sbjct 40144 TTCGGTACGGCGACAACAGCGGCGCCG---ATCAATCTGTTACGGATCGAGGAGAACCTT 40200 Query 25211 AGCGCGGTGCAT--CTTCGCCTGGCAAACACCGTAATCGAGTGCCTGCCATGGCAGGAGT 25268 ||| |||| | || ||||| ||| | || ||||||||||| || | Sbjct 40201 TCCGC--CGCATGGCAGCGGCTGGCCGGAACCTACGTGGAAAACCTGCCATGGCTCGACT 40258 Query 25269 GCGTGCGGCGCTACGATCGCCCGGGAACACTGTTCTACCTTGATCCGCCCTACTGGGAAA 25328 |||| | |||||||| || || || | |||| | || || || |||||| | Sbjct 40259 GCGTCCAACGCTACGACCGGCCACATACCTTTCACTACATGGACCCACCGTACTGGAAGG 40318 Query 25329 CCGAGGGCTATGGCGTTGAGTTCCCGTTTGCTGAGTACGAGGCGATGGCCGAGCTGATGC 25388 || ||||| || || || || || |||| | | |||||| ||||||||| | |||| Sbjct 40319 TCGCAGGCTACGGTGTCGATTTTCCCTTTGATCAATACGAGCAGATGGCCGAATTCATGC 40378 Query 25389 GCACCTCGGCTGGCCGGTTCGTGGTCTCGATCAACGACCATCCTGAGATCCG 25440 || | | || || | ||||| ||||||||||| || || ||||| Sbjct 40379 GCCAGTGCGAGGGGAGGGTGATGGTCAGTATCAACGACCACCCGGATATCCG 40430 >seq124742 Length=51505 Score = 89.7 bits (98), Expect = 1e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 10065 CGGGCCTTGGGCAAGACCCTGCTCACCTACCAGCGCAAGCATGGCCTGCGAACGGTGAAG 10124 || ||| |||| ||| ||||| ||||||||||| ||||| |||||| ||||||||| Sbjct 39503 CGTGCCCTGGGGAAGCTGCTGCTGACCTACCAGCGAAAGCACGGCCTGAAGACGGTGAAG 39562 Query 10125 GAGATCATCGGTCGCTGGGCGCCACCGGTGGAGAACAACACC 10166 | ||||| | || |||||||| ||||||||||| ||||| Sbjct 39563 GCAATCATAAGCCGGTGGGCGCCTTCGGTGGAGAACGACACC 39604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128594182992088