Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq109654 118 1e-21 seq115941 102 7e-17 seq98793 96.9 3e-15 seq97568 96.9 3e-15 seq113932 91.5 1e-13 seq106905 91.5 1e-13 seq97232 91.5 1e-13 seq86460 91.5 1e-13 seq86116 91.5 1e-13 seq64237 86.0 6e-12 >seq109654 Length=28343 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | ||| ||||| || || || ||||| |||||||| |||||| Sbjct 19103 ATACCACCACGGAGCCTGAGCACCAGATGAAGAGTCGACTCCTTCTGGATATTGTAATCG 19162 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| || | || ||||| ||| | || | | ||||||||||| Sbjct 19163 GCCAGGGTTCTGCCATCTTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGA 19222 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || |||||||| || || | || | ||||||||| |||| Sbjct 19223 GGGATCCCCTCCTTGTCTTGAATCTTGGCCTTAACATTGTCGATGGTGTCGGAGCTCTCG 19282 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| | || || |||||||| ||||| || || || ||||| Sbjct 19283 ACCTCGAGAGTGATGGTCTTACCGGTTAGGGTTTTGACGAAGATCTGCAT 19332 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | ||| ||||| || || || ||||| || || || || ||| Sbjct 18647 ATACCACCACGGAGCCTTAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCG 18706 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| ||| || | || ||||| || | ||||| | |||||||| || Sbjct 18707 GCGAGGGTTCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGG 18766 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || || || || ||||| || | || | ||||||||| || || Sbjct 18767 GGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGA-CGTTGTCGATGGTGTCGGATGATTC 18825 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||| || | ||| || ||||| | ||| || || || || ||||| Sbjct 18826 GACTTCGAGCGTGATCGTCTTTCCGGTCAAAGTCTTAACGAAGATCTGCAT 18876 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | ||| | || || || || ||||| ||||| || |||||| Sbjct 18875 ATACCACCACGGAGCCTGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCG 18934 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| ||| || | || ||||| || | ||||| | ||||| ||||| Sbjct 18935 GCGAGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGA 18994 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || || || || || |||| || | || | ||| ||||| ||||| Sbjct 18995 GGAATGCCTTCCTTGTCCTGTATCTTAGCCTTGA-CGTTGTCAATGGTATCGGAGGACTC 19053 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || ||||| | || || ||||| | || || || || || ||||| Sbjct 19054 GACCTCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 19104 >seq115941 Length=36387 Score = 102 bits (112), Expect = 7e-17 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || || || || ||| || | ||| Sbjct 5374 TGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGCGAGTGTCCGGCCATCCTCAAGTTGC 5433 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | ||||| | |||||||| || |||||||| || ||||||||||| || Sbjct 5434 TTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGAATCTTA 5493 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | || | || | |||||| || |||||| || | ||| | || || ||||| Sbjct 5494 GCTTTCA-CGTTGTCGATGGTGTCCGAGCTCTCGACCTCCAAAGTGATGGTCTTTCCGGT 5552 Query 45317 TAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 |||||||| || || |||||||| ||| || || Sbjct 5553 GAGAGTTTTGACGAAGATTTGCATACCGCCACGAA 5587 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || |||||||||||||||||||| ||| | ||| | || || | || Sbjct 5601 ATGGAGGGTCGATTCCTTTTGGATATTATAGTCGGCCAGGGTGCGACCGTCTTCGAGCTG 5660 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||||| ||| | |||| | ||||| || || ||||| || || || ||||| || || Sbjct 5661 CTTTCCAGCGAAAATCAGCCTCTGCTGATCTGGGGGAATCCCCTCCTTGTCTTGGATCTT 5720 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| |||| ||| || ||| |||||| || ||||| | || || ||||| Sbjct 5721 AGCCTTGACATTGTCTATGGTATCCGAACTCTCGACCTCTAGAGTGATGGTCTTACCGGT 5780 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| || || ||||||||| Sbjct 5781 TAGGGTTTTCACGAAGATTTGCATC 5805 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 || ||| || || || ||||||||||| ||||| || ||||| | || | ||| Sbjct 4680 CAGCACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCCGCAAGAGTCCTGCCATC 4739 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||||||| || || || | ||||| | || |||||||| ||||| || || || || Sbjct 4740 CTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCCGGGGGAATTCCCTCCTTGTC 4799 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 ||||||||| || | || | || || || |||||| ||||| || | || Sbjct 4800 TTGAATTTTCGCCTTTACATTGTCAATTGTATCAGAGCTCTCGACCTCGAGGGTGATGGT 4859 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || || || |||||||||||||| Sbjct 4860 TTTTCCCGTAAGGGTCTTCACAAAAATTTGCAT 4892 >seq98793 Length=19735 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | |||||||| || ||||| || ||||| ||||||||||| |||||||| Sbjct 5360 TTCCTCCCCTTAGCCTCAAAACAAGATGAAGAGTTGACTCCTTTTGGATGTTATAATCAG 5419 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | ||| ||| ||||| || ||||| || | ||||||| ||||| || || | Sbjct 5420 CAAGAGTTCGTCCATCCTCCAACTGCTTTCCGGCAAAGATCAATCTCTGCTGATCAGGAG 5479 Query 45232 GAATGCCTTCTTTATCTTGAA 45252 | |||||||| ||||| |||| Sbjct 5480 GGATGCCTTCCTTATCCTGAA 5500 >seq97568 Length=18938 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | |||||||| || ||||| || ||||| ||||||||||| |||||||| Sbjct 7136 TTCCTCCCCTTAGCCTCAAAACAAGATGAAGAGTTGACTCCTTTTGGATGTTATAATCCG 7077 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | ||| ||| ||||| || ||||| || | ||||||| ||||| || || | Sbjct 7076 CAAGAGTTCGTCCATCCTCCAACTGCTTTCCGGCAAAGATCAATCTCTGCTGATCAGGAG 7017 Query 45232 GAATGCCTTCTTTATCTTGAA 45252 | |||||||| ||||| |||| Sbjct 7016 GGATGCCTTCCTTATCCTGAA 6996 >seq113932 Length=32622 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GC 45171 |||||| | ||| | | ||| | || || || || ||||| ||||| || ||||| || Sbjct 27641 TCCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 27582 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | |||| || || | || ||||| ||| | || | || ||||||||||| | Sbjct 27581 T-AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTG 27523 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | ||||| || || || || || || |||| || | ||||||||||||||| | Sbjct 27522 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAA 27463 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || | ||||| || ||||| ||||| || || || ||||| Sbjct 27462 CCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 27414 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GC 45171 |||||| | ||| | | ||| | || || || || ||||| ||||| || ||||| || Sbjct 19560 TCCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 19501 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | |||| || || | || ||||| ||| | || | || ||||||||||| | Sbjct 19500 T-AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTG 19442 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | ||||| || || || || || || |||| || | |||||| |||||||| | Sbjct 19441 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCAA 19382 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || | ||||| || ||||| ||||| || || || ||||| Sbjct 19381 CCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 19333 >seq106905 Length=25706 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GC 45171 |||||| | ||| | | ||| | || || || || ||||| ||||| || ||||| || Sbjct 9551 TCCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 9492 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | |||| || || | || ||||| ||| | || | || ||||||||||| | Sbjct 9491 T-AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTG 9433 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | ||||| || || || || || || |||| || | ||||||||||||||| | Sbjct 9432 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAA 9373 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || | ||||| || ||||| ||||| || || || ||||| Sbjct 9372 CCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 9324 >seq97232 Length=18783 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GC 45171 |||||| | ||| | | ||| | || || || || ||||| ||||| || ||||| || Sbjct 12287 TCCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 12346 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | |||| || || | || ||||| ||| | || | || ||||||||||| | Sbjct 12347 T-AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTG 12405 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | ||||| || || || || || || |||| || | ||||||||||||||| | Sbjct 12406 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAA 12465 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || | ||||| || ||||| ||||| || || || ||||| Sbjct 12466 CCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 12514 >seq86460 Length=13305 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GC 45171 |||||| | ||| | | ||| | || || || || ||||| ||||| || ||||| || Sbjct 12087 TCCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 12028 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | |||| || || | || ||||| ||| | || | || ||||||||||| | Sbjct 12027 T-AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTG 11969 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | ||||| || || || || || || |||| || | ||||||||||||||| | Sbjct 11968 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAA 11909 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || | ||||| || ||||| ||||| || || || ||||| Sbjct 11908 CCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 11860 >seq86116 Length=13258 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| | || || || || ||||| ||||| ||||| ||| Sbjct 2932 ATCCCACCACGGAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCG 2991 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | || || || || | || | | ||||||||| ||| Sbjct 2992 GCCAAGGTTCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATGAGCCTTTGCTGGTCAGGC 3051 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || || || || ||| | || | || |||||| ||| Sbjct 3052 GGGATACCCTCCTTGTCCTGGATCTTAGCTTTCACATTGTCAATTGTATCGGAACTTTCG 3111 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| ||||| ||||| || || || |||||||||||||| Sbjct 3112 ACTTCCAAAGTAATGGTTTTCCCGGTAAGGGTCTTCACAAAAATTTGCAT 3161 >seq64237 Length=5233 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GC 45171 |||||| | ||| | | ||| | || || || || ||||| ||||| || ||||| || Sbjct 3089 TCCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 3148 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | |||| || || | || ||||| ||| | || | || ||||||||||| | Sbjct 3149 T-AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTG 3207 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | ||||| || || || || || || |||| || | |||||| |||||||| | Sbjct 3208 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCAA 3267 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || | ||||| || ||||| ||||| || || || ||||| Sbjct 3268 CCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 3316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451254705300960