Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq124121 291 2e-74 seq27057 154 4e-33 seq82978 136 1e-27 >seq124121 Length=49848 Score = 291 bits (322), Expect = 2e-74 Identities = 495/708 (70%), Gaps = 17/708 (2%) Strand=Plus/Plus Query 35308 GGCTTTCACAATGGCAAATCCGATTATTCCGTGGATCGGCGGCAAGCGGCGCCTTGCAGA 35367 ||||| |||| || | | || || || || ||||| |||||||| || ||||| || || Sbjct 39766 GGCTTGCACA-TGACCACCCCAATCATCCCTTGGATGGGCGGCAAACGCCGCCTGGCCGA 39824 Query 35368 CCATCTCATTCCGCGCTTTCCGGCGCACGACTGCTACGTTGAAGTGTTCGCGGGCGGCGC 35427 || ||||| |||| || || | ||||| |||||||| ||||| ||||| ||| |||| Sbjct 39825 CCGCCTCATCCCGCTATTCCCACCCCACGAGTGCTACGTCGAAGTCTTCGCCGGCAGCGC 39884 Query 35428 TGCGTTGTATTTCATGCGGCCGC---CGGCAAAGGTCGAGGTGATCAACGACGTTAACGG 35484 ||| |||| ||| | || || | | ||| || || || |||||||| | ||||| Sbjct 39885 TGCCTTGTTCTTCCTCCGCCCCCAACCCGCACCTGTTGAAGTCCTCAACGACATCAACGG 39944 Query 35485 CGAACTGATCAACCTGTATCGCGTCGTTCAGCATCACCTCGAGGAATTCGTGCGGCAGTT 35544 ||| ||| | |||||| |||||||| ||| ||||| | || || ||||| || || || Sbjct 39945 CGACCTGGTATGCCTGTACCGCGTCGTACAGAATCACTTGGAAGAGTTCGTCCGCCAATT 40004 Query 35545 CAAATGGGCGCTCACCAGTCGGCAGGTGTTCGAGTGGCTGAAGCAGACGGCGCCGGAAAC 35604 ||| |||||||||| | |||||||| |||||||||| ||| ||| |||||||| Sbjct 40005 CAAGTGGGCGCTCAGCTCACGGCAGGTATTCGAGTGGCAAAAGATGACCCGCCCGGAAAC 40064 Query 35605 GCTCACCGACATCCAGCGTGCGGCGCGGTTCTACTATCTGCAGAAAAACTGCTTTGGC-G 35663 |||||||||||||| |||||||| || |||| ||| || || | | ||| || || | Sbjct 40065 CCTCACCGACATCCAACGTGCGGCCCGATTCTTCTACCTCCA-ACACCATGCGTTCGCTG 40123 Query 35664 GGATTGTCCACGGGCAGACGTTCGGCACGGCTACCACTGCGCCGCCGGGTCTGAACTTGC 35723 | ||| ||| ||||| ||||| ||||| || || ||| ||||| | || || Sbjct 40124 CCAAAGTCTCCGGCCAGACCTTCGGTACGGCGACAACAGCGGCGCCG---ATCAATCTGT 40180 Query 35724 TGCGGATCGAGGAAGAATTATCCGCGGC---GCACTTGCGCCTCGCGAGCGCATATATCG 35780 | ||||||||||| | | ||||| || ||| ||| || || | | || | | Sbjct 40181 TACGGATCGAGGAGAACCTTTCCGCCGCATGGCA---GCGGCTGGCCGGAACCTACGTGG 40237 Query 35781 AGCGTCTGGACTGGGCGGATTGCATCGATCGCTATGACCGGCCGCACACGTTGTTCTATC 35840 | ||| ||| || ||| || | ||||| |||||||| || || || ||| Sbjct 40238 AAAACCTGCCATGGCTCGACTGCGTCCAACGCTACGACCGGCCACATACCTTTCACTACA 40297 Query 35841 TCGATCCGCCGTATTTCGA-GACGCGCGGCTACGGTGTCGATTTCCCGTTCGCTGAGTAC 35899 | || || ||||| | | | ||| ||||||||||||||||| || || | | | ||| Sbjct 40298 TGGACCCACCGTACTGGAAGGTCGC-AGGCTACGGTGTCGATTTTCCCTTTGATCAATAC 40356 Query 35900 GAGCGGATCGCGGAGAGGCTCCGCCGCATCAAAGGGCGAGCCATAGTAAGCCTGAACGAC 35959 |||| ||| || || | |||| | | ||| | | || || || | |||||| Sbjct 40357 GAGCAGATGGCCGAATTCATGCGCCAGTGCGAGGGGAGGGTGATGGTCAGTATCAACGAC 40416 Query 35960 CACGAGCAGATCCGTCGCGTATTCGACGGATTTCACATCGAGACGGTG 36007 ||| | | ||||| || ||||| || || |||||| | |||||| || Sbjct 40417 CACCCGGATATCCGGCGGGTATTTGATGGTTTTCACTTTGAGACGCTG 40464 Score = 93.3 bits (102), Expect = 1e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 32628 GCCGTTCGTGGTGCAGGGCGGGCAGGTGTTCTTGCGCCAGGCGCTCATCGGTTCCGGCTG 32687 |||||| ||||||||| ||||||| |||| | ||||||||| || ||| | Sbjct 35970 GCCGTTTGTGGTGCAGAACGGGCAGATGTTTATCAACCAGGCGCTGATTCAAGACGGTTC 36029 Query 32688 GATCACGAACGCGATGATCGGCAGCTACATCCAGTCCGACAACTACATCGCGGGCCGGCA 32747 ||||| ||| || |||||| |||| | || ||| || |||||||||| ||| || Sbjct 36030 CATCACTAACCTGAAAATCGGCGACTACCTGCAATCCAACGACTACATCGCAGGCACCCA 36089 Query 32748 GGGCTGGCGGCTCGACAAGAGCGG 32771 ||||||||| |||||||||| ||| Sbjct 36090 GGGCTGGCGACTCGACAAGACCGG 36113 >seq27057 Length=1822 Score = 154 bits (170), Expect = 4e-33 Identities = 507/769 (66%), Gaps = 28/769 (4%) Strand=Plus/Minus Query 8330 TCGAGCGCATCGACGAGCTGTTTCACCGCGAGGACCGCGGCGGGATCACCGGAACGCCGA 8389 |||| || |||||| |||||| || ||| |||||| |||||||| | | | Sbjct 752 TCGACCGTATCGACACGCTGTTCAACACCGA----CGCGGCC--ATCACCGGTATTTCCA 699 Query 8390 CCGGATTTGTCGACTTAGACGCGC-GACTCGACGGTATGCATGGCGGT--GAGTTGATTA 8446 |||| | || |||| | |||| | ||| | ||| |||| || || || ||||| | Sbjct 698 CCGGCTATGCCGACCTCGACGAGAAGACCAG-CGGCCTGCA--GCCGTCCGACTTGATCA 642 Query 8447 TCGTCGGCGGACGGCCGTCGATGGGAAAGACCTCCCTCGCAATGAATATCGCAGAGCATG 8506 |||||| ||| || || || ||||| |||||| || |||| ||||| | | || | | Sbjct 641 TCGTCGCCGGTCGTCCCTCCATGGGTAAGACCACCTTCGCGATGAACCTGGTCGAAAACG 582 Query 8507 TCGCCAT-CGTGTCGAGATTGCCCGTCGGCGTCTTGTCGCTGGAAATGCCGACCGAACAG 8565 || | || ||| | | ||||| || | || ||||| ||||| ||| | Sbjct 581 CCGTGTTGCGCAGCGACAA-GACCGTCCTGGTGTACTCCCTGGAGATGCCCGGTGAATCG 523 Query 8566 TTGACCATGCGCATGCTGGCGTCGACATCCCGTATCAGCCAAAACAGGCTGCGAACCGGT 8625 ||| |||||| ||||| |||| | ||||||| ||| | || | |||| |||| Sbjct 522 CTGATCATGCGGATGCTCTCGTCCCTAGGCCGTATCGACCAGACCAAGGTGCGTTCCGGC 463 Query 8626 CGCCTCGAGGATGACGACTGGCCGCGCCTGACGCGTGGCG-TCGAGCTGATGGCCGACGC 8684 | || || ||||||||||||||||| ||||| | |||| || | ||| | ||| | Sbjct 462 CAGCTGGAAGATGACGACTGGCCGCGGCTGAC-CTCGGCGGTCAACCTGCTCAATGAC-C 405 Query 8685 GCCCG-TGCATATTCTCGATAGCTCCGCGATCACCCCGTCGAA-ATTCAAGTCCGAGTTG 8742 || | || || ||| | | | ||||| ||| ||| | || | | || Sbjct 404 GCAAGCTGTTCATCGACGACACTGCGGGGATCAGCCCCTCGGAGATGCGTGCACGCACC- 346 Query 8743 CGGCGCTTGTATCGCGAATGCGGCCGGCTCGGGATGATTGTCGTTGACTACCTGCAGCTG 8802 || ||| || || ||| |||| | | |||| | | |||||||||||| || Sbjct 345 CGCCGCCTGGTGCGTGAACACGGCGATATTGCCTTGATCATGATCGACTACCTGCAGTTG 286 Query 8803 ATGTCGGGTGACGG----CGGCGGATCTGAAATGCGGGCCACCGAGGTCGCCGAAATATC 8858 ||| | | | ||| | |||| ||| | ||| ||| |||| | |||| || || Sbjct 285 ATG-CAGATCCCGGGTTCCAGCGG---TGACAGCCGGACCAACGAGATTTCCGAGATTTC 230 Query 8859 GCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCT 8918 || | | ||| | || |||||| || || ||| | | |||||||| ||||| Sbjct 229 CCGGTCCTTGAAAGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCCCAGCT 170 Query 8919 TAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTC 8978 || || || || | || || |||||||| || || | ||||| |||| || || Sbjct 169 CAACCGTTCCCTGGAACAACGTCCCAACAAGCGCCCGGTGAACTCCGACTTGCGGGAATC 110 Query 8979 GGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGATGAGGTCTATAA 9038 |||||||||||||||||| |||||||||||| | || | |||||||| ||||| || | Sbjct 109 GGGTGCGATCGAGCAGGACGCCGACGTGATCATGTTCGTGTACCGCGACGAGGTATACCA 50 Query 9039 CCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGCAG 9087 |||||| | || | || | ||||| |||||||| | |||||| Sbjct 49 CCCCGAGACCGAGCACAAAGGCATCGCCGAGATCATCATCGGCAAGCAG 1 >seq82978 Length=11807 Score = 136 bits (150), Expect = 1e-27 Identities = 300/443 (68%), Gaps = 9/443 (2%) Strand=Plus/Minus Query 38462 GCCGCTCGCGCGTCGACAATGCCCAGCAGGTGGCTGGCCAACATAATCATTTCGACGGCT 38521 || || || || ||||| | || ||| |||||||| |||||||| | || || | || Sbjct 1694 GCTGCGCGAGCATCGACTACGCGCAGAAGGTGGCTCGCCAACATGACGATCTCTGCCGCC 1635 Query 38522 TCGCGCGGCGTGTCGATCGGTACGTTTCGATGTGAATGGGGGTTTTTGTACGACCCAATT 38581 || || | | || ||||| || || ||||| || || ||||| ||||| || || | Sbjct 1634 TCCCGAGCACTCTCCATCGGCACATTCCGATGAGAGTGCGGGTTCTTGTAGGAGCCGACC 1575 Query 38582 GCTCCGGCAAACAGGGCGGACAGGGCCTCTTGCTCACCTACGTCCTTGGTATGGTCAGCT 38641 || || || ||||| | ||||||||| |||| | | |||| || | | | || Sbjct 1574 GCGCCCGCGAACAGATTAGCCAGGGCCTCACGCTC--CGGC-TCCTCGGCGTCGGGATCT 1518 Query 38642 AGT--GGACCTGTATTTGGAGCAAAGGCTCTCCTTATCATCGGCACGCCATGGTCGGC-T 38698 | || || | ||| | ||||| | || ||||||||||||||||| ||| | | Sbjct 1517 ATAAGGGGCCCGGCCTTGCCG--AAGGCCCGCCGGATCATCGGCACGCCATGCTCGCCTT 1460 Query 38699 GCGGGATATTCGGCTGCAGTCCGGACCGCGATTTCGACGGCACGCATCGCCTCGAAAACG 38758 ||| || | | || || ||||| ||||| || || ||||| |||| || ||| Sbjct 1459 GCGCGA-ACCCAGCGGCCTCTCGGACTGCGATCTCCACCTGCCGCATGGCCTGAAACACG 1401 Query 38759 GCCGTTGGATAGGCGCCGCGCATAAAGGACAGCCATGCATCATTTGAGATCGCTGAGTGC 38818 || ||||| ||| ||| ||||| || ||| |||| || | | ||||| || |||| Sbjct 1400 GCGGTTGGGTAGTCGCTCCGCATGAATGACTGCCAAGCGGCGGAAGCGATCGATGGGTGC 1341 Query 38819 AGCAAGTCTTTCGGTAGTAGACGGGCGGTGCGGTAGTTGACAAATGCAGCCTCGTTCTCG 38878 |||| |||| |||| || ||||| ||| ||||| | || | ||| | |||| Sbjct 1340 AGCATGTCTCGTTGTAGAAGTCGGGCAGTGGCGTAGTCCGCGAACTCGCTCTCATCCTCG 1281 Query 38879 AAGCGGCGTGCGCGACGGCTCAG 38901 || | ||||| || |||||||| Sbjct 1280 AACTGCCGTGCCCGGCGGCTCAG 1258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127344951320496