Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq63231 116 5e-21 seq109206 96.9 4e-15 seq124973 95.1 1e-14 >seq63231 Length=5017 Score = 116 bits (128), Expect = 5e-21 Identities = 228/326 (70%), Gaps = 16/326 (5%) Strand=Plus/Plus Query 12749 GCGGTTCGTCGCCGCGATGACAACGATGCC--CGTCTCGTTATCGAAGCCATCCATCTCA 12806 |||||| || ||||| ||||| | |||||| ||| || || |||||||| ||||||||| Sbjct 3609 GCGGTTGGTTGCCGCAATGACGATGATGCCATCGT-TCATT-TCGAAGCCGTCCATCTCA 3666 Query 12807 GTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCAC 12864 || ||||| || | ||| || ||||| ||||||| || || ||| ||||| | Sbjct 3667 ACCAGCAGTTGGTTAAGGGTCTGCTCACGCTCATCATGACCGC-CAC-CCATGCCCGCGC 3724 Query 12865 TGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGT---TGATTTT 12921 || || || || ||||| ||||| || ||||| | ||| || || || |||| Sbjct 3725 CACGATGGCGGCCAACTGCGTCGATTTCATCGATGAAGATGATGCATGGCGCATGCTTTT 3784 Query 12922 CACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCA 12981 | || ||| || ||||| || || | ||||||||||||| |||||||| || | Sbjct 3785 TA---GCCTGTTCGAACATATCGCGAACACGGCTGGCACCGACACCGACAAACATTTCGA 3841 Query 12982 CAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGG 13040 | |||| | | ||||| || | || ||| || || |||| ||| || || || || | Sbjct 3842 CGAAATCAGAGCCGGAA-ATGGTGAAGAAAGGCACCTTGGCTTCGCCGGCAATCGCCTTG 3900 Query 13041 GCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || || | ||| || || || || || Sbjct 3901 GCCAGCAAGGTTTTACCGGTACCCGG 3926 >seq109206 Length=27697 Score = 96.9 bits (106), Expect = 4e-15 Identities = 174/254 (69%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || || || || || || | || || ||||| ||||| ||||| | || || ||| Sbjct 8030 CCTTCATCTCGCGATATCAACTCGTTAGAGAACGTGAGACCCGGCATCAACCCGCGTTTC 8089 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | ||| || ||||| || || || ||||||||||||||||| || || |||||| Sbjct 8090 TTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCGACGCAGGCGAAC 8149 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | | ||||| || || || || || | |||| |||| |||||||| Sbjct 8150 GCGATCAACCGCTCCGCGAAAGATTCTGA---GCCGTCGATCCACCTCATGGCCCACTGA 8206 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGAT 127777 ||||| || | | ||| || | ||||| ||| || | |||||| ||||| || | Sbjct 8207 GCCTTCTTGGCCACACAAGGAATGGTCTCGATGGCGTGAAAGAGGCGGTTCTTCTCAGCC 8266 Query 127778 GGATCTTTGATGTA 127791 || ||||| ||||| Sbjct 8267 GGGTCTTTAATGTA 8280 >seq124973 Length=53790 Score = 95.1 bits (104), Expect = 1e-14 Identities = 249/372 (67%), Gaps = 6/372 (2%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| ||||| || || || ||||| || || | ||||||||| | Sbjct 43348 AACCCATCCATCTCTGTCAATAGCTGGTTAATGGTCTGCTCTCTCTCATCATTCCCACCT 43407 Query 12852 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 | ||| || | | ||| | || || || |||||||| || || || || || || Sbjct 43408 CCAAGACCAGCCCCTCTTTGTCTCCCAACTGCATCAATTTCATCTATAAACACAATGCA- 43466 Query 12912 GGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970 || || |||| || ||| ||||| | ||| || |||| ||||| || || || Sbjct 43467 GGGTGCTTTTGACTTGGCCTTCTCAAACAAATCCCGGACTCGAGACGCACCAACTCCAAC 43526 Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGC 13030 ||||| |||||||| | | || | ||| || || || ||| | |||||| || Sbjct 43527 AAACAATTCCACAAACTCTGAAGCTGCACAAGAGAAAAACGGCACGCCAGCTTCACCAGC 43586 Query 13031 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCAC- 13089 | ||||| || | |||||||| || || || ||| || | |||| | |||| | Sbjct 43587 CACTGCTCGAGCCAAAAGGGTCTTTCCAGTACCAGGTGGTCCAACAAGAA-GACACCCCT 43645 Query 13090 GTGGGATCCTGGCACCACTTCCAAAGTAGCGCTC-GGGTTGTTTAAGAAAGTCCACGATT 13148 ||||||| | || ||| | || ||| || ||||| || |||||| || || | Sbjct 43646 TTGGGATCTTAGCTCCAAGTGCAGTGTACTTATCTGGGTTCTTCAAGAAA-TCAACCACC 43704 Query 13149 TCTTCCAATTCA 13160 |||| ||||||| Sbjct 43705 TCTTGCAATTCA 43716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612491262752160