Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq109206 140 5e-28 >seq109206 Length=27697 Score = 140 bits (154), Expect = 5e-28 Identities = 542/841 (64%), Gaps = 27/841 (3%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 ||||||| || ||||||||||| |||| || ||||| ||||| | | || |||| Sbjct 7737 TCTTCTCAAAGAAGTTGGTCTTACCCTGCAACGATATCAGCTCCATCCAATCAAAGGGGT 7796 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 ||| | | ||| ||| | | || | || ||| ||| | || ||||| || | Sbjct 7797 TCTGGGCATTGTAGATCTTGGCGTAACCCAACGCATCCATCAATCGATCAGCCACGAACT 7856 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 |||| || | ||||| | |||| ||| || |||| || | | || || || || Sbjct 7857 CGATATACTTGCACATAAGATCACCGTTCATACCCACCAACGCACAAGGCAGAGCATC-- 7914 Query 159828 ACAGA--AACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTA 159885 ||||| |||||| |||| || || || || ||| | || | ||| || || | Sbjct 7915 ACAGACGAACTCCCTCTCGATATCAACGGCATCGCGGATGATTCCCCTGACTCGCTCCTC 7974 Query 159886 CCCCGGCTTGCCCA----AAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 | | |||| | || ||| |||| | | ||||| || |||||||| | Sbjct 7975 GCTCAGCTTCTTCTTCAGAAGCGTG-----TAAA--GCAAACACGCGAAATCGCAGTGTA 8027 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 || || || || || || |||||||| || | |||| |||||||| | ||| || Sbjct 8028 ACCCTTCATCTCGCGATATCAACTCGTTAGAGAACGTGAGACCCGGCATCAACCCGCGTT 8087 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 || |||||||| || || ||| |||| ||| || ||||||||||| ||| || Sbjct 8088 TCTTTAGCCAAAATATCGC-GCAGAAGCTTCCGGAGAAGAAGATCCCCTCGACGCAGGCG 8146 Query 160061 AACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120 ||||| | | || ||| | ||||| | | | | | | ||||||| ||||||| Sbjct 8147 AACGCGATCAACCGCTCCGCGAAAGA---TTCTGAGCCGTCGATCCACCTCATGGCCCAC 8203 Query 160121 TCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCC 160180 | ||||||||| || | || || ||| ||||| ||||| ||| | | || || ||| Sbjct 8204 TGAGCCTTCTTGGCCACACAAGGAATGGTCTCGATGGCGTGAAAGAGGCGGTTCTTCTCA 8263 Query 160181 TTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCG 160240 | || || || ||| | | || |||||| || | ||| | ||| ||| Sbjct 8264 GCCGGGTCTTTAATGTAAGTCTCCAACAAGAGACTGTACATCTCAGAGTGAATATTCTCG 8323 Query 160241 ATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGTGAA 160299 || || ||||| || || || ||||||| | || || | ||||| |||| Sbjct 8324 ATAGCGATCTGGAACCCATAAAAGGCACGCGCCTCC-GCGACTTGAATCTCCTTCATGAA 8382 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 |||| | ||||| | ||| | ||||| | ||| ||||||||||| | || || Sbjct 8383 CCTTCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGCGGCAAAGAAAGCAAGAACATG 8442 Query 160360 AGAGATGAAATGTCTCTCGTCTTTGTTGAGTC-TCTTTTCCCAGTGTGTCACGTCTTGGG 160418 || ||||| || |||| || ||||| | || ||||| || || |||||||| Sbjct 8443 GGAAATGAAGTGCTTCTCATC----GGGAGTCATGTTCTCCCATTGGGTATTGTCTTGGG 8498 Query 160419 CCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGA 160478 | ||| ||||| ||||| |||| | |||| || | |||||||| |||| | Sbjct 8499 AGAGATCCACCTCCTCCGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTACATCTCCCAAA 8558 Query 160479 T 160479 | Sbjct 8559 T 8559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793838462746560