Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq115941 102 6e-17 >seq115941 Length=36387 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || || | || | |||| || || || || ||||| || || Sbjct 4437 GCCACCACGAAGACGGAGGACAAGGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGC 4496 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| | | |||| ||||| |||||||| | |||||||| | |||||| |||| || Sbjct 4497 CAAAGTCCTTCCATCTTCCAACTGTTTCCCAGCGAAAATTAACCTCTGCTGGTCCGGTGG 4556 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||| |||||||| |||||| || | | | | || || | ||| ||||| Sbjct 4557 GATGCCCTCTTTGTCTTGAATTTTTGCCTTGACATTATCAATGGTATCCGAGCTCTCCAC 4616 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||||||| || || || || || || || || || |||||||||||| Sbjct 4617 CTCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTAACAAAGATCTGCATG 4665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346808753978108