Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq101633 131 2e-25 seq124973 129 7e-25 seq109206 107 2e-18 >seq101633 Length=21634 Score = 131 bits (144), Expect = 2e-25 Identities = 283/419 (68%), Gaps = 6/419 (1%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || ||| | | || || || || || |||| || || |||| | || ||| Sbjct 10966 TCAAGAATGTCAGCTCTGTTAGTGGCAGCAATAACAATGATGCCGGTGTTACCTT--CAA 10909 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 |||||||||| ||||| ||||||||||||| || ||||| | ||||||||| || | Sbjct 10908 AACCATCCATTTCTGTTAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCCCC 10849 Query 16036 TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 16095 | |||| || | || ||||||| |||||||| ||||||| || || ||||| | Sbjct 10848 CAATTCCAGTACCTCTCTGTCTTCCCACAGCATCAATTTCATCAACAAATACAATGCAAG 10789 Query 16096 GTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAA 16155 || ||| || || || || ||||| ||||| || || || || ||||||| Sbjct 10788 GTGCATTCTCCTTGGCCTTTTTGAAAAGATCACGTACTCGAGAAGCACCAACTCCAACAA 10729 Query 16156 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 16214 |||| || ||||| | | | | | || | || || || ||| || |||||| ||| Sbjct 10728 ACATTTCAACAAACTCAGAACCCG-AGATGGAGAAAAATGGAACACCAGCTTCACCAGCA 10670 Query 16215 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT 16274 || ||| || || |||||||| || || || || || | || || | ||| Sbjct 10669 ATTGCTTTAGCTAGCAGAGTCTTTCCAGTTCCAGGGGGGCCAACAAGAAGAACTCCTTTA 10610 Query 16275 GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 ||||| || ||| | || | | || ||||||| ||| | ||| ||||| | ||| Sbjct 10609 GGAATGCGAGCCCCAACTGCAGTGAACCTTTCAGGTTTCTTCAAAAACTCCACCACCTC 10551 >seq124973 Length=53790 Score = 129 bits (142), Expect = 7e-25 Identities = 261/381 (69%), Gaps = 6/381 (2%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||||||||| ||||||||||| || || || | ||||||||| | Sbjct 43347 AAACCCATCCATCTCTGTCAATAGCTGGTTAATGGTCTGCTCTCTCTCATCATTCCCACC 43406 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | |||||| | | ||| | || || |||||||| ||||| || || || ||||| Sbjct 43407 TCCAAGACCAGCCCCTCTTTGTCTCCCAACTGCATCAATTTCATCTATAAACACAATGCA 43466 Query 16094 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 || || |||| | | | || ||||| | |||||| || || || || || ||| Sbjct 43467 -GGGTGCTTTTGACTTG-GCCTTCTCAAACAAATCCCGGACTCGAGACGCACCAACTCCA 43524 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 16211 ||||||| |||||||| | || || | ||| || || || || || |||||| Sbjct 43525 ACAAACAATTCCACAAACTCTGAAGCTGCACAAGAGAAAAACGGCACGCCAGCTTCACCA 43584 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 || | ||||| || | ||| ||||| || ||||| || | || | || | |||| Sbjct 43585 GCCACTGCTCGAGCCAAAAGGGTCTTTCCAGTACCAGG-TGGTCCAACAAGAAGACACCC 43643 Query 16272 C-GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | ||| ||||| || ||| | || ||| | || || | ||| | ||||| || | Sbjct 43644 CTTTGGGATCTTAGCTCCAAGTGCAGTGTACTTATCTGGGTTCTTCAAGAAATCAACCAC 43703 Query 16331 CTCTTCCAATTCATCTTTGGC 16351 ||||| ||||||| ||| || Sbjct 43704 CTCTTGCAATTCAAGTTTTGC 43724 >seq109206 Length=27697 Score = 107 bits (118), Expect = 2e-18 Identities = 360/550 (65%), Gaps = 13/550 (2%) Strand=Plus/Minus Query 102075 GCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCG 102134 ||||||||||| | |||||| | |||||| | || |||| ||| | ||||| || Sbjct 8265 GCTGAGAAGAACCGCCTCTTTCACGCCATCGAGACCATTCCTTGTGTGGCCAAGAAGGCT 8206 Query 102135 GATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCA 102194 | ||||| |||| |||| | || || || || || ||||| | |||| Sbjct 8205 CAGTGGGCCATGAGGTGGATCGACGGC---TCAGAATCTTTCGCGGAGCGGTTGATCGCG 8149 Query 102195 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 102254 || || || || ||||| ||||||||||| || ||||||||| || | |||||| ||| Sbjct 8148 TTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTTTGGCTAAAG 8089 Query 102255 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 102314 || || || | ||||| |||||| ||||| |||||| | || || || || || || Sbjct 8088 AAACGCGGGTTGATGCCGGGTCTCACGTTCTCTAACGAGTTGATATCGCGAGATGAAGGG 8029 Query 102315 CTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAAC-CAACGACTGA 102373 | ||| || || ||| |||| || | || | || | | ||| || Sbjct 8028 TTACACTGCGATTTCGCGTGTTTGCTTTACACGCTTCTGAAGAAGAAGCTGAGCGA-GGA 7970 Query 102374 GACTATTCATTCTATTGTTAAG-GAAGCCGTTGAGATTGAGAAGGGATTCATATTGGATG 102432 | | | ||| | | | | || |||||||| || |||| || ||| | | |||| Sbjct 7969 G-CGAGTCAGGGGAATCATCCGCGATGCCGTTGATATCGAGAGGGAGTTCGTCTGTGATG 7911 Query 102433 CCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCCGAATATATTGAGTATG 102492 | || || || || | | |||||||| ||| |||| | | ||||| |||| | Sbjct 7910 CTCTGCCTTGTGCGTTGGTGGGTATGAACGGTGATCTTATGTGCAAGTATATCGAGTTCG 7851 Query 102493 TATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCA--ATTTGGAACTCCAAGAATCC 102550 | ||||| ||||| || | | | |||| | ||| || | || || |||| || Sbjct 7850 TGGCTGATCGATTGATGGATGCGTT--GGGTTACGCCAAGATCTACAATGCCCAGAACCC 7793 Query 102551 ATTTGACTTCATGGAGAACATTAGCCTCG-ACGGGAAGACAAACTTCTTCGAAAAGAGGG 102609 ||||| | |||||| | || | | | | || ||||| |||||||| || ||||||| Sbjct 7792 CTTTGATTGGATGGAGCTGA-TATCGTTGCAGGGTAAGACCAACTTCTTTGAGAAGAGGG 7734 Query 102610 TTGGGGACTA 102619 |||| || || Sbjct 7733 TTGGAGAGTA 7724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619714481622720