Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq109206 100 3e-16 seq26752 89.7 6e-13 >seq109206 Length=27697 Score = 100 bits (110), Expect = 3e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 119513 CCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTT 119572 ||||||||| || || || | ||| ||| ||| || || ||||| | || | ||| Sbjct 8029 CCCTTCATCTCGCGATATCAACTCGTTAGAGAACGTGAGACCCGGCATCAACCCGCGTTT 8088 Query 119573 CTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAA 119632 |||||||||||| || || || || ||||| || |||||||| ||||| || |||||||| Sbjct 8089 CTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCGACGCAGGCGAA 8148 Query 119633 AGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAGTTGGC 119692 |||| | ||||| || |||| | || ||||| |||| | | ||||| | || Sbjct 8149 CGCGATCAACCGCTCCGCGAAAGATTCTGAGCCGTCGATCCACCTCATGGCCCACTGAGC 8208 Query 119693 CTT 119695 ||| Sbjct 8209 CTT 8211 >seq26752 Length=1779 Score = 89.7 bits (98), Expect = 6e-13 Identities = 286/438 (65%), Gaps = 8/438 (2%) Strand=Plus/Plus Query 110768 CCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGG 110827 |||||| || ||||| || ||| ||| |||| | ||||| || | | || | || Sbjct 23 CCTGGTCGACGTAGCGAGCGGTGTTGTTGTAGACACGAAGCATGGGCACGAGACCGTTGG 82 Query 110828 ATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATAC 110887 | ||||| || || | ||| | | ||||||||||| ||| | | | || Sbjct 83 AAGTGCCATTGGTGCCACCAATGTAAGCGCCAGTGGCACGAATGCGGTGAGTGTTGAGAC 142 Query 110888 CAATACCACCCGCCCACTTACTAAT--TTGTGCACACTCTGTGAGTGTACCATAAATACC 110945 |||||||||| || ||| || | | ||| | ||| |||| ||| | || ||||| Sbjct 143 CAATACCACCAGCGTTCTTGGAGATCATGGCGCAGA-TCT-TGAGAGTATCGTAGATACC 200 Query 110946 ATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 ||||| || |||| || | || || |||||||| | || ||| | |||| || Sbjct 201 CTCAATGCTGTCATCCTTCATGTCGATGAGGAAGCAAGACGCCAGCTGTGCCTGAGGGGT 260 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTG 111063 || || ||||||| ||||| | ||||| ||| || |||| |||||| | |||| Sbjct 261 ACCTGCGCTGAAGAGCGTAGGGGAGGCATGTGTGA--AGTACTTGTTGGACATGTAGTTG 318 Query 111064 TATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAAC 111123 || || |||| ||||| | || | ||||| || || | ||||| ||||||| | Sbjct 319 TAGGTCTCGATTGCGGCCTCGATGTCGTCGCCGTGGATGCCGACAGCAACACGCATGATC 378 Query 111124 ATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGG 111183 || | || || | ||| | || || |||| || |||| || ||| || Sbjct 379 ATGTGCTGTGGTCTCTCGGCAACTTTGCCGTCAATGCGGAGAAGATATGAGCGCTCGAGC 438 Query 111184 GTCTTGAGACCAAAGTAT 111201 ||||||| ||||||||| Sbjct 439 GTCTTGAAGCCAAAGTAT 456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588000685192800