Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq124973 125 8e-24 seq101633 125 8e-24 seq128333 95.1 1e-14 seq26752 91.5 2e-13 seq109206 89.7 6e-13 >seq124973 Length=53790 Score = 125 bits (138), Expect = 8e-24 Identities = 259/380 (68%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||||||||| || |||||||| || || || | ||||||||| | Sbjct 43347 AAACCCATCCATCTCTGTCAATAGCTGGTTAATGGTCTGCTCTCTCTCATCATTCCCACC 43406 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | |||||| | | ||| | || || |||||||| ||||| || || ||||| || Sbjct 43407 TCCAAGACCAGCCCCTCTTTGTCTCCCAACTGCATCAATTTCATCTATAAACACAATGCA 43466 Query 9401 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 || || |||| | ||| | ||||| | ||| || || | || || || |||| Sbjct 43467 -GGGTGCTTTTGACTTGGCCTTCTCAAACAAATCCCGGACTCGAGACGCACCAACTCCAA 43525 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||||| |||||||| | || || | ||| || || || || || |||||| | Sbjct 43526 CAAACAATTCCACAAACTCTGAAGCTGCACAAGAGAAAAACGGCACGCCAGCTTCACCAG 43585 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 | | ||||| || | ||| ||||| || ||||| || | || | || | |||||| Sbjct 43586 CCACTGCTCGAGCCAAAAGGGTCTTTCCAGTACCAGG-TGGTCCAACAAGAAGACACCCC 43644 Query 9580 -GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATC 9638 ||| ||||| || ||| | || ||| | || || | ||| | ||||| || | | Sbjct 43645 TTTGGGATCTTAGCTCCAAGTGCAGTGTACTTATCTGGGTTCTTCAAGAAATCAACCACC 43704 Query 9639 TCTTCCAATTCATCTTTGGC 9658 |||| ||||||| ||| || Sbjct 43705 TCTTGCAATTCAAGTTTTGC 43724 >seq101633 Length=21634 Score = 125 bits (138), Expect = 8e-24 Identities = 229/333 (69%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || ||| | | || || || || || |||| || || || | | |||||| Sbjct 10966 TCAAGAATGTCAGCTCTGTTAGTGGCAGCAATAACAATGATGCCGGTGTTACCTTCAAAA 10907 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||| ||||| ||||||| || ||||| | ||||||||| || | | Sbjct 10906 CCATCCATTTCTGTTAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCCCCCA 10847 Query 9345 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT 9404 |||| || | || ||||||| |||||||| ||||||| || ||||| || ||| Sbjct 10846 ATTCCAGTACCTCTCTGTCTTCCCACAGCATCAATTTCATCAACAAATACAATGCAAGGT 10787 Query 9405 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAAC 9464 ||| || ||| ||| || ||||| || || | || || || ||||||||| Sbjct 10786 GCATTCTCCTTGGCCTTTTTGAAAAGATCACGTACTCGAGAAGCACCAACTCCAACAAAC 10727 Query 9465 ATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT 9523 || || ||||| | | | | | || | || || || ||| || |||||| ||||| Sbjct 10726 ATTTCAACAAACTCAGAACCCG-AGATGGAGAAAAATGGAACACCAGCTTCACCAGCAAT 10668 Query 9524 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| || || |||||||| || || || || Sbjct 10667 TGCTTTAGCTAGCAGAGTCTTTCCAGTTCCAGG 10635 >seq128333 Length=65618 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| || |||||||| |||| |||||||||||| || | || ||| ||||| | || Sbjct 22938 CTGAGGCCTTGGTGTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGCTG 22997 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| ||| ||||||| | |||| |||| || ||| ||| || || | || Sbjct 22998 AGACATCATGTGATATGTCTTGATAGCAGATTCAACATCCTCCTTGTGAATTCCAACAGC 23057 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 107344 || | ||| ||||||| ||| ||| |||| || | | || | | | || |||| Sbjct 23058 AACCCTCATCAACATGTGTTGCGGTCTTTCAATAACTTTTCCTTGTA--CCTTCAAGAGG 23115 Query 107345 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 || | ||||||||||||||| ||||| ||| || | ||| | || || Sbjct 23116 TATGACCTCTCAAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCACG 23165 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTT--ATCTG 106505 ||| || ||| || || ||||||||||||||||| ||||| || || | || | || Sbjct 21679 ACAAACCGTGGTAGAGCAATTGATGCCAAATTGCACACAGCAGTTTC--CGTTGGACTTG 21736 Query 106506 TGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 106565 ||||||| | || |||||||||||||| ||| || || || |||| || | ||| | Sbjct 21737 TGTACTCAATTATCTCTGTACACAAGTTCGAAGATTTTATGGTGCCCAGGTTTTGTTGAT 21796 Query 106566 TACTCTTTTTGTTGCACGCATCCT 106589 |||| || ||||||| | ||||| Sbjct 21797 TACTTTTCCTGTTGCAAGTATCCT 21820 >seq26752 Length=1779 Score = 91.5 bits (100), Expect = 2e-13 Identities = 174/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 107063 CCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATAC 107120 |||||||| ||||| ||| ||||| | ||||| | | | ||||| | ||||||| Sbjct 142 CCAATACCACCAGCGTTCTTGGAGATCATGGCGCAGAT--CTTGAGAGTATCGTAGATAC 199 Query 107121 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 107180 | | || ||| ||||| || |||| ||||||||| | || ||| | || | Sbjct 200 CCTCAATGCTGTCATCCTTCATGTCGATGAGGAAGCAAGACGCCAGCTGTGCCTGAGGGG 259 Query 107181 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCG 107239 |||| || ||||||| || || | || || |||| ||| | | |||||| | || | Sbjct 260 TACCTGCGCTGAAGAGCGTAGGGGAGGCATGTGTGAAG-TACTTGTTGGACATGTAGTTG 318 Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299 || ||||| | | | || ||||| || ||||||||||||| || |||||||| | | Sbjct 319 TAGGTCTCGATTGCGGCCTCGATGTCGTCGCCGTGGATGCCGACAGCAACACGCATGATC 378 Query 107300 ATGTATTGGGGT 107311 |||| || ||| Sbjct 379 ATGTGCTGTGGT 390 >seq109206 Length=27697 Score = 89.7 bits (98), Expect = 6e-13 Identities = 174/256 (68%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || |||||||| || || | || || ||||| || || ||||| | || || ||| Sbjct 8030 CCTTCATCTCGCGATATCAACTCGTTAGAGAACGTGAGACCCGGCATCAACCCGCGTTTC 8089 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | |||| | || |||||||| |||||||||||||| ||||| || || || ||| Sbjct 8090 TTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCGACGCAGGCGAAC 8149 Query 117412 GCAAAAAGGCGCTCGGCGAAGGA--GCGAGACTTTGTGTCAAACCATTTCATTGCCCATT 117469 || | | ||||| ||||| || ||| | ||| | ||| |||| ||||| | Sbjct 8150 GCGATCAACCGCTCCGCGAAAGATTCTGAGCC-----GTCGATCCACCTCATGGCCCACT 8204 Query 117470 TCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAG 117529 |||||||| | | ||| || | || | |||||| | ||| | | ||||| |||| Sbjct 8205 GAGCCTTCTTGGCCACACAAGGAATGGTCTCGATGGCGTGAAAGAGGCGGTTCTTCTCAG 8264 Query 117530 ATCCATCCTTAATGTA 117545 || |||||||| Sbjct 8265 CCGGGTCTTTAATGTA 8280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589003821294240