Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq27057 102 2e-17 >seq27057 Length=1822 Score = 102 bits (112), Expect = 2e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 37597 CTGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAG 37656 ||||| || || || ||||||||| | || |||| ||| | |||||| |||| Sbjct 213 CTGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCCCAGCTCAACCGTTCCCTGGAA 154 Query 37657 CAGCGTGCAAACAAGCGACCGTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716 || ||| | |||||||| ||| || ||||||| || || ||||| | ||||||||| Sbjct 153 CAACGTCCCAACAAGCGCCCGGTGAACTCCGACTTGCGGGAATCGGGTGCGATCGAGCAG 94 Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAGATG 37776 || || || ||||| | | || || ||||||||| ||| |||| |||| ||| Sbjct 93 GACGCCGACGTGATCATGTTCGTGTACCGCGACGAGGTATACCACCCCGAGACCGAGCAC 34 Query 37777 AAAGGCGTCACTGAAATCATC 37797 |||||| || | || |||||| Sbjct 33 AAAGGCATCGCCGAGATCATC 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150933384648792