Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq26725 107 5e-19 seq27069 93.3 1e-14 >seq26725 Length=1775 Score = 107 bits (118), Expect = 5e-19 Identities = 204/294 (69%), Gaps = 10/294 (3%) Strand=Plus/Minus Query 1204 TGTTCGACGAAGCGTCCAACATTGCC-GATCTGGTATGGGAAGTAGCAGAGGGTGCGCTT 1262 ||||||||||||| || | | |||| || | | |||||||| || ||||||| || Sbjct 1157 TGTTCGACGAAGCATC-AGCGGTGCCCGACAAGATTTGGGAAGTGGCCGAGGGTGGCCTG 1099 Query 1263 ACGGACGAGGATACCGAAATTATTTGGGTGGCGTTTGGTAACCCGACGCGTAACACTGGG 1322 || |||| || ||| | ||| | | || || ||||| || || | ||| || Sbjct 1098 ACTGACGGCGAG-CCGT-----TCTGGTTCGTCTTCGGCAACCCCACCCGGACCACCGGC 1045 Query 1323 CGTTTCCGTGAATGTTTCCGCAAATACAAACACCGCTGGAAGTGCGCGCAGATTGACAGC 1382 || |||||||| || | ||||| | | || ||||||||| | ||||| |||||| Sbjct 1044 CGCTTCCGTGAGTGCTGGCGCAAGTTCCGCCATCGCTGGAAGACCCGTCAGATCGACAGC 985 Query 1383 CGCACCGTGGAAGGC-ACCAACAAGCAGCAACTGCAAAAGTGGGTGGACGACTACGGCGA 1441 ||| | | ||| || |||||| | | | | |||||| | |||||||||||| Sbjct 984 CGC-CAGGCCAAGATGACGAACAAGGACCTGATCAAGCAGTGGGCTGCCGACTACGGCGA 926 Query 1442 AGACAGCGACTTCGTGAAGGTTCGCGTGCGCGGGATCTTCCCTGATGCGTCTGA 1495 ||| ||||||| | |||||||||||||| || | ||||| ||||||||| Sbjct 925 AGAGTCCGACTTCTTCAAGGTTCGCGTGCGTGGCCTGTTCCCGTCTGCGTCTGA 872 >seq27069 Length=1825 Score = 93.3 bits (102), Expect = 1e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 4690 AAGGAAGAGAAACTGCTGATGCTTGGTCCGGTGCTGGAGCGACTAAACGACGAAGCGCTC 4749 ||||||||||| ||||||||||||| || ||||||||||| | |||||||| ||| Sbjct 1310 AAGGAAGAGAAGATGCTGATGCTTGGCCCTGTGCTGGAGCGCATCAACGACGAGCTGCTG 1251 Query 4750 AACCCTCTTATCGACCGCGTGTTCTCCATCATGGCGCGC 4788 |||| || ||||||||||| ||| ||||||| |||| Sbjct 1250 GACCCGCTGATCGACCGCGTCTTCAACATCATGCTGCGC 1212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123472652635152