Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq27057 185 3e-42 seq10919 116 1e-21 seq34304 84.2 7e-12 seq26594 80.6 8e-11 >seq27057 Length=1822 Score = 185 bits (204), Expect = 3e-42 Identities = 156/192 (81%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | |||||| ||||||||||| |||||||| || || || |||||||| || Sbjct 193 CCCGGTGGTGGCGCTGTCCCAGCTCAACCGTTCCCTGGAACAACGTCCCAACAAGCGCCC 134 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 | ||| || ||| |||| || || || |||||||||||||||||||| ||||||||||| Sbjct 133 GGTGAACTCCGACTTGCGGGAATCGGGTGCGATCGAGCAGGACGCCGACGTGATCATGTT 74 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 |||||||||||||||||| |||||||| || ||| || || ||| | || ||| | || Sbjct 73 CGTGTACCGCGACGAGGTATACCACCCCGAGACCGAGCACAAAGGCATCGCCGAGATCAT 14 Query 21493 CATCGCGAAGCA 21504 ||||| ||||| Sbjct 13 CATCGGCAAGCA 2 >seq10919 Length=1139 Score = 116 bits (128), Expect = 1e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21316 CGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACCGAT 21375 ||| || | | || ||||||| | |||| |||||||| |||||| | ||||| ||||| Sbjct 160 CGTCATGGCGGTGGCGCAGCTGAGCCGCGACCTGGAGCGCCGGCCGGATAAGCGCCCGAT 219 Query 21376 GATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGT 21435 | ||| ||||||||||| |||| |||||||||||||||||| || ||| | ||||| Sbjct 220 GCCGTCCGACCTGCGCGACAGCGGGCAGATCGAGCAGGACGCCGACGTCATCCTCTTCGT 279 Query 21436 GTACCGCGACGAGG 21449 |||||||| |||| Sbjct 280 CTACCGCGAGGAGG 293 >seq34304 Length=2423 Score = 84.2 bits (92), Expect = 7e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 47594 || ||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||| Sbjct 104 ACTGGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 162 >seq26594 Length=1759 Score = 80.6 bits (88), Expect = 8e-11 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 9627 ATCACCTCGCGCTCGCCGTTGGAGTTCGGTGCCGATACGACCCCGGCCGCCTCCATCGCT 9686 || || |||||| |||||||| |||| ||| | ||||| |||||| ||||| ||| Sbjct 382 ATGACTTCGCGCGAGCCGTTGGTGTTCATTGCAGTGACGACACCGGCCATTTCCATGGCT 323 Query 9687 TCAACGATGCGCGCGGCACGGTTGTAGCCGATCTTCA 9723 || | ||||| ||||| |||||||||||||| |||| Sbjct 322 TCGATCATGCGGGCGGCGCGGTTGTAGCCGATTTTCA 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156863241381464