Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq124742 221 4e-53 seq124121 176 2e-39 seq93341 123 9e-24 seq34304 84.2 8e-12 seq27057 80.6 9e-11 >seq124742 Length=51505 Score = 221 bits (244), Expect = 4e-53 Identities = 317/444 (71%), Gaps = 2/444 (0%) Strand=Plus/Plus Query 48620 GGCGCGGAAGGCAATCGCAGACCGCGAGAGGCGAGAGGTCAGGGTTCGGAAGGAGAAGTT 48679 |||||| ||||| | || || |||| | || ||| ||| || ||||||||| | Sbjct 4296 GGCGCGCAAGGCCTTGGCCGATATCGAGCGCAAGGACATCAAGGTCCGAAAGGAGAAGCT 4355 Query 48680 GAAGAGTCGGTCGGATCACCTGCGCGAGGCTCAGCAGGCGTTCAACGAGTTCATTCGGTG 48739 |||| ||| || ||| |||||||||| |||||||| ||||| | || ||| ||| Sbjct 4356 GAAGTCTCGCGGCGACCACATGCGCGAGGCACAGCAGGCATTCAATGCGTACATCCGGGC 4415 Query 48740 GCGCGACCGCATCGCCGGTCACGCCTGCATCTCCAGCGGCCTGCCCCTGGATTGGTCTGG 48799 | |||| |||||||| ||| ||||||||||||||| | | |||| ||| || Sbjct 4416 CAGAGACCAGGCCGCCGGTCGCGCGTGCATCTCCAGCGGCAAGGCGTTGGACTGGAGCGG 4475 Query 48800 AAAC-CAGACGGATGCCGGGCACTACAGGTCGACCGGAGCCGCGCCGCATCTCCGCTTTA 48858 ||| ||| | ||||||| || ||| | || | ||||| || || ||||| Sbjct 4476 CAACGCAGTAG-ATGCCGGCCATTACCGCAGCGTTGGTTCTGCGCCACACCTGCGCTTCG 4534 Query 48859 ACGAGAACAACTGCCACGCCCAGCGGAAGCTGGATAACCGCTATCTCTCCGGCAATGCAG 48918 ||||| ||||||||| |||||| | |||| ||| ||||| | || || ||||| |||| Sbjct 4535 ACGAGCGCAACTGCCATGCCCAGAGCAAGCAGGACAACCGGTTCCTGTCTGGCAACGCAG 4594 Query 48919 TGGATTACCGGGTCGGCCTGATCGCTCGGATCGGTCTGGCCGCTGTCGAGGAGTTGGAGG 48978 |||| |||||| ||||||||||||| || || || | || || ||||| | |||| | Sbjct 4595 TGGACTACCGGATCGGCCTGATCGCGCGCATTGGCCAGGAGGCCGTCGACGCTCTGGAAG 4654 Query 48979 CGGACAACTCCGTCCGCAAGTACACCGTAGAAGACCTGAAGGCCATCAAGGCCCACTACC 49038 | || | ||| ||||||||| |||| || | | |||| |||||||||| |||||| Sbjct 4655 CAGATCAGAGCGTGCGCAAGTACTCCGTTGAGCAGATCAAGGGCATCAAGGCCTACTACC 4714 Query 49039 GCGCCAAGGTGCGCGAGCTGAAGA 49062 | || ||| | |||||||||| Sbjct 4715 GGGCAAAGACAAGAGAGCTGAAGA 4738 >seq124121 Length=49848 Score = 176 bits (194), Expect = 2e-39 Identities = 269/383 (70%), Gaps = 3/383 (1%) Strand=Plus/Plus Query 3707 ATCACCATCTACGAGCCGATTGGCTACGACTGGTGGACCGGTGAAGGTGTCACGGCAAAA 3766 ||| |||||| ||| || || |||| ||| ||||| || || || ||||| || ||| Sbjct 20508 ATCTCCATCTTCGACCCTATCGGCTTCGATCCCTGGACAGGCGAGGGCGTCACCGCGAAA 20567 Query 3767 CGCATTGCTGGCGCTCTGCGCTCCATCGGCAACGATGTCGATGTGACCGTGAACATCAAC 3826 |||||||| | ||| | ||| | |||| | || || || | || |||||||||||| Sbjct 20568 CGCATTGCCGCCGCGTTACGCACTATCGACGGCGCTGACGTT---ACGGTGAACATCAAC 20624 Query 3827 AGCCCCGGCGGCGACGTATTCGAAGGCCTGGCCATTTACAACCTGCTGCGCGAGCACAAG 3886 || ||||||||| | |||||||||||||| || |||||||||||||| ||| || Sbjct 20625 TCGCCGGGCGGCGACATGTTCGAAGGCCTGGCTATCTACAACCTGCTGCGGGAGTACTCC 20684 Query 3887 GGCAAGGTCACGGTGAACATCATCGGCCTGGCTGCCTCTGCCGCCTCTTTCATCGCCATG 3946 ||||||||| | || | | || ||||| || || || || || | | || ||| Sbjct 20685 GGCAAGGTCGTCATCAAGGTGCTGGGGCTGGCCGCATCGGCAGCATCAATTGTTGCTATG 20744 Query 3947 GCGGGGGATGAAATCCGCATCGGCCGCGCCGCCTTCCTGATGATCCATAACGCCTGGCTG 4006 || || || || | ||||||| |||||||| || |||| || ||||| |||| | Sbjct 20745 GCCGGAGACGAGGTGCGCATCGCCCGCGCCGGATTTCTGAACATTCATAATTGCTGGGTA 20804 Query 4007 ATCGCCATGGGTAATCGGAATGATCTCCGTGAGATAGCCGATTGGCTGGAGCCATTCGAC 4066 | |||||||| ||||| |||| || ||||| || | ||||| || ||||| Sbjct 20805 GTTGCCATGGGCAATCGTTATGACCTTACAGAGATGGCGCAGAGGCTGTTACCGTTCGAT 20864 Query 4067 ATGACGCTGGCTGACATTTACGC 4089 | | |||| || || ||||| Sbjct 20865 CAGGCCATGGCAGATATCTACGC 20887 Score = 109 bits (120), Expect = 2e-19 Identities = 243/360 (68%), Gaps = 11/360 (3%) Strand=Plus/Plus Query 5266 CGCCTGGCGATCCTTCAGGCGCAACTGGC-CGAGTTCCCGGCCAGCGGTATCGTGCTCAA 5324 |||||||| || || || || ||||| || ||| | ||| |||| || || || | Sbjct 23011 CGCCTGGCAATGCTGCAAGCCCAACTCGCGCGACTGCCCT-CCAGTGGCCATGTTCTGCA 23069 Query 5325 CCCCATCGACTGGGCGCTGATCGAGCTGACCAAGGACGCCGAGAACCGTTACATCATCGG 5384 | ||||||||||| ||||||||||||||| ||| || | ||| ||||| ||| Sbjct 23070 CTTTATCGACTGGGCCAAGATCGAGCTGACCAAAGACACCTTGGGCCGCTACATACTCGC 23129 Query 5385 CAGCCCGCAGAACGGCACCACTCCGACCCTCT---GGCGTCTGCCGGTGGTGGAAACCCA 5441 || ||| | | ||| | || | | | | || | ||||| ||||||| ||| | Sbjct 23130 CAACCCTCTG---GGCCTCGCTGGGCCTGTGTTGTGGGGCCTGCCAGTGGTGGCGACCGA 23186 Query 5442 GGCCATCAC---TCAGGACGAGTTCCTGACCGGTGCGTTCTCTCTCGGCGCCCAGATCTT 5498 ||||| | | | | ||||||||||||| || ||| | ||||| ||| | || Sbjct 23187 GGCCAGTGGGTTTGAAGGCAAGTTCCTGACCGGCGCCTTCCGTACTGGCGCGCAGTTGTT 23246 Query 5499 CGACCGCATGGACATCGAGGTTCTGGTTTCCACCGAGAACGACAAGGACTTCGAGAACAA 5558 |||||| ||| | || || | ||||||||||| | ||||||||||| || Sbjct 23247 CGACCGGGAAGACGCTAACGTAGTGATCAGCACCGAGAACGCGGACGACTTCGAGAAAAA 23306 Query 5559 CATGGTCACCATCCGCGCTGAGGAGCGGCTGGCCTTCGCGGTCTATCGCCCCGAGGCTTT 5618 | || || |||||||| ||| || || | ||| | || || | ||||||||||| || Sbjct 23307 CCTGATCTCCATCCGCTGTGAAGAACGCGTCGCCCTGGCCGTGAAGCGCCCCGAGGCCTT 23366 >seq93341 Length=16452 Score = 123 bits (136), Expect = 9e-24 Identities = 95/113 (84%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 38358 CCCTCTGCCAACGCCTGCTCTTCGCTGATGTCCTGCAGGCGCTCGACGCGAACAGCGGTG 38417 ||||| ||| ||||| || |||||||||||||||| |||||||| || || ||||| Sbjct 14060 CCCTCGGCCTTGGCCTGGTCGTCGCTGATGTCCTGCAACCGCTCGACCCGCACGTCGGTG 14001 Query 38418 ATCTCCAGCAGGATGCGGGAGGCCCAGCGGGGCATGTGGATACTTGGCTTCCA 38470 |||||||||||||||||| ||||||||| ||||||||||| || || ||||| Sbjct 14000 ATCTCCAGCAGGATGCGGCTGGCCCAGCGCGGCATGTGGATGCTGGGTTTCCA 13948 >seq34304 Length=2423 Score = 84.2 bits (92), Expect = 8e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 27080 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27138 || ||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||| Sbjct 104 ACTGGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 162 >seq27057 Length=1822 Score = 80.6 bits (88), Expect = 9e-11 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 45569 CGCCCCGACAAGCGTCCGGTCCTCAGCGACCTGCGCGAGTCCGGCGCCATTGAGCAAGAC 45628 || ||| ||||||| ||||| | |||| |||| || || || || || ||||| ||| Sbjct 150 CGTCCCAACAAGCGCCCGGTGAACTCCGACTTGCGGGAATCGGGTGCGATCGAGCAGGAC 91 Query 45629 GCCGACATCGTCATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGACAGGAAG 45688 |||||| | ||||||||||||||||||| || || || ||| | | ||| || Sbjct 90 GCCGACGTGATCATGTTCGTGTACCGCGACGAGGTATACCACCCCGAGACCGAGCACAAA 31 Query 45689 GGTATCGGCGAAATCCTGATCCGGAAG 45715 || |||| ||| ||| | ||| | ||| Sbjct 30 GGCATCGCCGAGATCATCATCGGCAAG 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172483429725232