Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq59399 208 1e-48 >seq59399 Length=4332 Score = 208 bits (230), Expect = 1e-48 Identities = 305/425 (72%), Gaps = 15/425 (4%) Strand=Plus/Plus Query 22951 CGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAA 23010 ||||| |||||| ||||| || | || || || | | |||||| || || || Sbjct 3168 CGGTCTTTGTAGGACACTTCACAGGCCTCGTCGGACTGCAGGAACAGCATCTGCGCCACG 3227 Query 23011 CCTTCGCCAGCGTAGATCAGTGCCGG--GCTTGGTGTGGTATTGGAAAACTCCAGAGTAA 23068 |||||| |||||||| ||||| || ||||| || |||||||||||||| || | Sbjct 3228 CCTTCGTTGGCGTAGATTTTCGCCGGCAGCGTGGTG--GTGTTGGAAAACTCCAGGGTCA 3285 Query 23069 GCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCAT 23128 ||||| ||| || ||||| ||||| || ||||| |||||||||||||| ||||| | Sbjct 3286 CGTGGCCTTCCCACTCGGGTTCAAGCGGTGTCACGTTGACGATGATGCCGCAGCGCGCGT 3345 Query 23129 ACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCG 23188 | || ||| || |||||||| | |||||||| ||||| |||| |||| | Sbjct 3346 AGGTGCTTTTACCCAGGCAGATGGTCAGCACGTCACGGGGAATACGGAAGAATTCCACGG 3405 Query 23189 TGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTTGGAACGTGC 23247 || ||||| ||||| ||||||||||||||| || | | | | ||| ||| Sbjct 3406 TGCGCGCCAGGGCGAAGGAGTTCGGCGGAATGATGCACACGTCG--CTCTTG--ACG--- 3458 Query 23248 TTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTG 23307 ||| ||||| | | |||| || |||||||||||||| | ||| ||| | |||| Sbjct 3459 -TCG--ACGAAGCTCTTTTCGTCAAAGTTCTTTGGATCGACGATCGCCGAATTGATGTTG 3515 Query 23308 GTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTGGAAACACCGTAG 23367 ||||| |||||||| || | |||| || | ||||||||||||||||||||| |||||| Sbjct 3516 GTGAACACCTTGAACTCATCGGCGCAGCGCACATCGTAGCCGTAGCTGGAAACGCCGTAG 3575 Query 23368 GGAAT 23372 | ||| Sbjct 3576 GAAAT 3580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896107229878080