Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq124742 210 7e-50 >seq124742 Length=51505 Score = 210 bits (232), Expect = 7e-50 Identities = 349/500 (70%), Gaps = 7/500 (1%) Strand=Plus/Plus Query 48517 CACCAGGCTGATACCTGCGAGCGAAGTCAGTGAGTGGGT--AAGCCGCCAAATCCTCAGC 48574 |||| | |||| || || |||||| | || ||| | |||||| | || || | Sbjct 11118 CACCCGCCTGACCCCGGCTCCCGAAGTGTGGGATTGGCTCCAAGCCG--AGATACTTGCC 11175 Query 48575 GATACCGGCAGCATCCATAACCCTGACCACGAACACCTGTTAGAGGCTGACCTCTGCTTC 48634 || |||||||||||||| ||| ||||| | || || | || | | | || | || Sbjct 11176 GACACCGGCAGCATCCACAACGAAGACCATGCCCATCTACTGGATGTAGGCATCCGGGTC 11235 Query 48635 ATGTGGGCGTCCGATTCGTTCGCTAAGAAAGGGCGGTATGTCCTCGGCCAAGCCGAGCAG 48694 ||||||||||| | |||| ||| | || || ||||| ||||| ||||||||| Sbjct 11236 ATGTGGGCGTCGTCTAGCTTCGAGAAGCAGGGAAGGACAGTCCTGGGCCAGGCCGAGCAG 11295 Query 48695 GTAATGCTCCGCGCCGGTGGTTGGCAGAAAGCCAGAATGGAACAGCAGATGTATGAATGG 48754 ||| | ||||||| ||||| |||||||||||| ||||||| || |||||| | || ||| Sbjct 11296 GTAGCGTTCCGCGCGGGTGGCTGGCAGAAAGCCCGAATGGAGCAACAGATGCACGATTGG 11355 Query 48755 TTCGGGCGCATCCCGAAGTTCATCATCACGCTGGCAGCCGATTACTGCTCACAATGCAAT 48814 ||||| | ||| ||||||||||| |||| || || |||||| | || |||| Sbjct 11356 TTCGGCGATGTGCCGGCCTTCATCATCACCTTGGCCGCTGACTACTGCGCCCAGTGCAGC 11415 Query 48815 GACCTCGAGTTCTGCGCACTGGTAGAGCATGAGCTTTACCACATCGCACAGGCCACCGAT 48874 ||||| ||||||||||| ||| | || || ||||| || ||| | || || || ||||| Sbjct 11416 GACCTTGAGTTCTGCGCCCTGATCGAACACGAGCTGTATCACCTGGCTCACGCTACCGAC 11475 Query 48875 GATTTCGGAGCGCCTAAGTTCAACAAAGAGACCGGGCATCCATTGCTTACACTGCGCGGC 48934 | | ||| || |||| | | |||| | ||| || | | | |||| || Sbjct 11476 AAGTACGGTCAACCAGCATTCACCCA--AGACGGTGCA-CCGAAGATCAAGCTGCAGAGC 11532 Query 48935 CACGACGTCGAAGAATTCATTGGTGTCGTACGTCGATACGGTGCCAGCAAAGAAGTACAG 48994 |||||||||||||| ||| | ||||| || || || |||||||| ||| || || || Sbjct 11533 CACGACGTCGAAGAGTTCGTCGGTGTGGTCCGCCGCTACGGTGCAAGCCCTGACGTTCAA 11592 Query 48995 GAGCTTGTTGATGCGGCCAA 49014 | | | || ||||| || || Sbjct 11593 GCGTTGGTGGATGCTGCAAA 11612 Score = 131 bits (144), Expect = 5e-26 Identities = 242/347 (70%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 1 ATGGCGACACTGAAAGGTGAGGTCAAAGCCTTCATCGTTCAGTCTCTTGCCTGTTTCGAT 60 ||||| | ||||| ||||||| |||| ||||||||||||| | | || || || || Sbjct 11714 ATGGCAAACCTGAATAGTGAGGTGAAAGGCTTCATCGTTCAGGCCTTGGCGTGCTTTGAC 11773 Query 61 ACTCCATCCCAGGTGGTTGAGCTGGTCAAAAAAGAATTTGGC-CTGAGCATCACACGTCA 119 || || || |||||||| ||| |||||| ||||||| ||| |||| ||| | ||||| Sbjct 11774 ACCCCCTCTCAGGTGGTAGAGGCCGTCAAACAAGAATTCGGCATTGAG-ATCTCCCGTCA 11832 Query 120 GCAGGTCGAATCCCACGACCCGACGAAAGCAAACG-GCAGGGGCCTGGCGCAGAAATGGG 178 || ||||| || || |||| |||| || ||| | ||| ||| ||||||| Sbjct 11833 GCTTTGTGAATCGCATGATGCGAC-CAAGCGGGCGAGCAAGACCCTCGCGGCCAAATGGG 11891 Query 179 TGGACATGTTCAATGCCACCCGTAAACGATTCCAGAATGAGATCGCCGACATACCGATCG 238 || | |||| | | |||||| ||||||||| | | |||| ||||| ||||| |||| Sbjct 11892 TGACCCTGTTTCACGACACCCGCAAACGATTCAGGGAGGAGACGGCCGAGATACCAATCG 11951 Query 239 CGAACAAAGCGTACCGGTTACGCGTTCTCGACCGAATGGCGACCAATGCTGAAAAGATGA 298 | ||| | |||| | ||| || | || ||||| || || |||| |||| Sbjct 11952 CCAACCGTTCTCACCGACTTCGCACGCTTGGGCGCATGGCTGAGAAAGCCGAAAGCATGA 12011 Query 299 AGAACTACGGCA-TGACCTCGCAACTTATCGAGCAGGCCGCCAAAGA 344 ||||| | ||| | || | || || | |||||||| |||||||| Sbjct 12012 AGAAC-ATTGCACTCACTGCCCAGCTATTGGAGCAGGCAGCCAAAGA 12057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156802537029136