Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq124742 82.4 2e-11 >seq124742 Length=51505 Score = 82.4 bits (90), Expect = 2e-11 Identities = 150/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 31606 CCGCGCCG-AAGATCAGGGCGACGTGGTAGGCATCGTTCACAGCCACCCTGACGCCACCA 31664 ||||| || |||| | |||||| ||| | ||||| || ||| |||||||| ||||||| Sbjct 28342 CCGCGGCGGAAGACCTGGGCGAGGTGATCGGCATTGTCCACTCGCACCCTGATGCCACCA 28401 Query 31665 GCCAGCCGAGCGAGCTGGATAAGGCGCAGTGCGACGTTACAGAGCTGCCCTGGCATATCC 31724 || |||| || || ||| |||||| | || | |||||||||||| || Sbjct 28402 GCAGGCCGTCACCGCATGACTTGGCCATGTGCGAGGCCACGGCGCTGCCCTGGCACATTT 28461 Query 31725 TGAGCTGGCCCGAGGGCGATTTACGCACCATCTACCCGCGGGGTGAGC-TGCCGCTGATT 31783 || |||||||||||| || | ||||| ||| ||| ||| ||| ||||||| | Sbjct 28462 TGTCCTGGCCCGAGGGAGACATGCGCACGATCACGCCGACGGG-CAGCACGCCGCTGCTC 28520 Query 31784 GGCCGCTCGTTTGTGCTGGGCGTCTATGACTGCTGG 31819 || |||| || | |||| || ||||||||| Sbjct 28521 AATCGGCCGTTCGTACACGGCGCCTGGGACTGCTGG 28556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127594158661632