Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq115941 136 3e-27 seq109654 129 5e-25 seq86116 109 4e-19 >seq115941 Length=36387 Score = 136 bits (150), Expect = 3e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||| || || || |||||||| || | ||| ||| |||| ||||||||| Sbjct 4690 TGAAGGGTTGATTCCTTCTGGATGTTGTAATCCGCAAGAGTCCTGCCATCCTCCAATTGC 4749 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| | |||||| || || ||||| || || || ||||||||||| Sbjct 4750 TTCCCAGCAAAAATCAACCTCTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATTTTC 4809 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| | || | || ||||| | || || || || |||| ||||| || || Sbjct 4810 GCCTTTACATTGTCAATTGTATCAGAGCTCTCGACCTCGAGGGTGATGGTTTTTCCCGTA 4869 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| || ||||| Sbjct 4870 AGGGTCTTCACAAAAATTTGCAT 4892 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| || |||||||| || || ||||| || ||||| || ||| Sbjct 5350 CCTCCACGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGCG 5409 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | |||||| || || || ||||| | ||| || || || ||| Sbjct 5410 AGTGTCCGGCCATCCTCAAGTTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 5469 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || ||||||||||| || ||| || | || | ||||| || | || || Sbjct 5470 ATGCCCTCCTTATCTTGAATCTTAGCTTTCACGTTGTCGATGGTGTCCGAGCTCTCGACC 5529 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| || || ||||| | |||||| || || || ||||| Sbjct 5530 TCCAAAGTGATGGTCTTTCCGGTGAGAGTTTTGACGAAGATTTGCAT 5576 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || || || || || || || || | ||| || |||| ||||| || Sbjct 4462 TGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGCCAAAGTCCTTCCATCTTCCAACTGT 4521 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || || | ||| || || || || ||||| ||||| |||||||||||| Sbjct 4522 TTCCCAGCGAAAATTAACCTCTGCTGGTCCGGTGGGATGCCCTCTTTGTCTTGAATTTTT 4581 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || || || | ||||| || | ||||| || || || || Sbjct 4582 GCCTTGACATTATCAATGGTATCCGAGCTCTCCACCTCCAAAGTGATGGTCTTTCCAGTC 4641 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || || || ||||| ||||||||| Sbjct 4642 AAGGTCTTAACAAAGATCTGCATG 4665 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| ||| || || || || |||||||| ||||||||||| | || || | || || Sbjct 4912 ACTAGATGGAGAGTGGACTCCTTTTGTATGTTGTAATCGGCAAGTGTCCTTCCGTCCTCG 4971 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || ||||| || | | ||| || || || || || || || |||||||| Sbjct 4972 AGTTGCTTTCCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCCTCCTTATCTTGG 5031 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || ||| | || | ||| || || | || || || | || | ||||| Sbjct 5032 ATCTTTGCCTTGACATTGTCAATAGTATCGGAGCTCTCAACCTCCAATGTTATTGTTTTC 5091 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || || ||||| |||||||| Sbjct 5092 CCGGTAAGGGTCTTAACAAAAATCTGCAT 5120 >seq109654 Length=28343 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||||||||||| || || || || |||||||| || | ||| | | Sbjct 17749 ACGGAGAACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGACC 17808 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||||||||| |||||||| || | |||||| || || || || |||||||| || Sbjct 17809 GTCCTCCAATTGCTTCCCTGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTT 17868 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || ||||| |||||| | || | |||||||| | ||||| || | ||||| Sbjct 17869 GTCCTGGATTTTAGCCTTTACATTATCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGAT 17928 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || | || || || || || ||||| Sbjct 17929 GGTTTTGCCCGTAAGGGTCTTCACGAAGATTTGCAT 17964 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||||||||||| |||| | |||| || Sbjct 18896 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTTCGGCCATCCTCG 18955 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| ||||| | ||| ||||| || ||||||||||| || || || Sbjct 18956 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGT 19015 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | || || |||||||||| || || Sbjct 19016 ATCTTAGCCTTGACGTTGTCAATGGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTT 19075 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || || || |||||||| Sbjct 19076 CCGGTCAAGGTCTTGACGAAGATCTGCAT 19104 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || || || || || |||||||||||||| | |||||| |||| || | || Sbjct 19129 ATGAAGAGTCGACTCCTTCTGGATATTGTAATCGGCCAGGGTTCTGCCATCTTCGAGCTG 19188 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | | ||| || || || || || || || || |||||||| || Sbjct 19189 CTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGAGGGATCCCCTCCTTGTCTTGAATCTT 19248 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||||| || | || || || ||||||| || || ||||| Sbjct 19249 GGCCTTAACATTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTACCGGT 19308 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || |||||||| Sbjct 19309 TAGGGTTTTGACGAAGATCTGCAT 19332 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || ||||| || || || || || || || ||||| ||||| Sbjct 18194 CCTCCACGGAGACGAAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCA 18253 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | | || || | || || || || || || | |||||| || || || ||| Sbjct 18254 AGGGTACGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGA 18313 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || ||||| || || | || | ||||| || | || || Sbjct 18314 ATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATTGTGTCGGAGCTCTCGACC 18373 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || || ||||| | ||||| |||||||||||||| Sbjct 18374 TCAAGGGTGATGGTCTTCCCGGTGAGGGTTTTCACAAATATCTGCAT 18420 >seq86116 Length=13258 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| |||||||| || || ||||||||||| | ||| | | | || || Sbjct 3409 ACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAATCGGCAAGAGTACGGCCGTCCTCA 3468 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||| | ||| || || || || || ||||| || |||||| Sbjct 3469 AGCTGCTTGCCAGCGAAAATCAATCTCTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGA 3528 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || |||| || || | |||| ||||| Sbjct 3529 ATCTTGGCCTTGACGTTGTCAATTGTGTCGGAGCTTTCGACCTCCAAGGTGATGGTTTTT 3588 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||||| ||||| || |||||| Sbjct 3589 CCAGTAAGGGTTTTGACAAAGATTTGCATG 3618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395638588213932