Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq86116 105 5e-18 seq115941 98.7 8e-16 seq113932 98.7 8e-16 seq106905 98.7 8e-16 seq97232 98.7 8e-16 seq86460 98.7 8e-16 seq64237 98.7 8e-16 seq98793 93.3 3e-14 seq109654 91.5 1e-13 seq97568 89.7 4e-13 >seq86116 Length=13258 Score = 105 bits (116), Expect = 5e-18 Identities = 159/225 (71%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| |||||| ||||| |||||||||| || | ||| Sbjct 3628 AGACGGAGCACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGCAAGGGTGCGA 3687 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| ||||| | || || || | || | |||||| Sbjct 3688 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGAGGGATACCCTCC 3747 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | | || || |||||||| | || Sbjct 3748 TTGTCTTGGATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTTTCCACCTCAAGGGTG 3807 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC-GTGTG 48772 || |||||||| || | |||||| ||||| ||||||||| ||||| Sbjct 3808 ATAGTTTTTCCGGTAAGAGTTTTCACAAAGATCTGCATCTGTGTG 3852 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || |||||||| || | || | | | || |||| ||||||||| || || Sbjct 2514 CTCCTTCTGGATATTGTAGTCCGCCAGGGTCCTCCCATCCTCCAGCTGCTTACCAGCGAA 2573 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | ||| || || | |||| |||||||||||| |||||| || ||| Sbjct 2574 AATAAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATT 2633 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | ||||| ||| ||||||| ||||| || || || ||||| || || || Sbjct 2634 ATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTTCCCAGTCAAGGTCTTGAC 2693 Query 48755 AAAAATCTGCAT 48766 |||||| ||||| Sbjct 2694 AAAAATTTGCAT 2705 >seq115941 Length=36387 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || ||||| |||||||||| ||| ||| | || || Sbjct 5140 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCGAGAGTTCTCCCATCCTCA 5199 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || || || ||||| || || | ||| | |||||||||||| | Sbjct 5200 AGCTGCTTTCCAGCGAAGATAAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGA 5259 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | || || ||||||||||| || || |||||| Sbjct 5260 ATCTTGGCTTTCACATTGTCAATGGTGTCCGAGCTCTCCACCTCCAAAGTTATGGTTTTT 5319 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| ||||| || ||||| Sbjct 5320 CCAGTGAGGGTTTTGACAAAGATTTGCAT 5348 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| ||| | || || || || || || || |||||||| | Sbjct 4665 GCCACCCCTCAGACGCAGCACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCCGC 4724 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | | | || ||||| ||||| || ||||| |||| | |||||| |||| ||| Sbjct 4725 AAGAGTCCTGCCATCCTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCCGGGGG 4784 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| ||| || |||||| | | | || || ||| || Sbjct 4785 AATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTGTCAATTGTATCAGAGCTCTCGAC 4844 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || ||||||||||| | || || |||||||| ||||| Sbjct 4845 CTCGAGGGTGATGGTTTTTCCCGTAAGGGTCTTCACAAAAATTTGCAT 4892 >seq113932 Length=32622 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||||| || || || ||| || || || |||||||| | | Sbjct 19559 CCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT 19500 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| |||| || | |||||| ||||| || || || ||||| || |||| || Sbjct 19499 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 19440 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || || | ||| ||| Sbjct 19439 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCAACC 19380 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||| | ||||| || || |||||||| Sbjct 19379 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 19333 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||||| || || || ||| || || || |||||||| | | Sbjct 27640 CCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT 27581 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| |||| || | |||||| ||||| || || || ||||| || |||| || Sbjct 27580 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 27521 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || || | ||| ||| Sbjct 27520 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACC 27461 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||| | ||||| || || |||||||| Sbjct 27460 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 27414 >seq106905 Length=25706 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||||| || || || ||| || || || |||||||| | | Sbjct 9550 CCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT 9491 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| |||| || | |||||| ||||| || || || ||||| || |||| || Sbjct 9490 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 9431 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || || | ||| ||| Sbjct 9430 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACC 9371 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||| | ||||| || || |||||||| Sbjct 9370 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 9324 >seq97232 Length=18783 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||||| || || || ||| || || || |||||||| | | Sbjct 12288 CCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT 12347 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| |||| || | |||||| ||||| || || || ||||| || |||| || Sbjct 12348 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 12407 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || || | ||| ||| Sbjct 12408 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACC 12467 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||| | ||||| || || |||||||| Sbjct 12468 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 12514 >seq86460 Length=13305 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||||| || || || ||| || || || |||||||| | | Sbjct 12086 CCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT 12027 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| |||| || | |||||| ||||| || || || ||||| || |||| || Sbjct 12026 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 11967 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || || | ||| ||| Sbjct 11966 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACC 11907 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||| | ||||| || || |||||||| Sbjct 11906 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 11860 >seq64237 Length=5233 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||||| || || || ||| || || || |||||||| | | Sbjct 3090 CCTCCCCTGAGACGGAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCT 3149 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| |||| || | |||||| ||||| || || || ||||| || |||| || Sbjct 3150 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 3209 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || || | ||| ||| Sbjct 3210 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACC 3269 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||| | ||||| || || |||||||| Sbjct 3270 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 3316 >seq98793 Length=19735 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||||||||| ||| || | ||| || || ||| ||||| || || ||||||| Sbjct 5362 CCTCCCCTTAGCCTCAAAACAAGATGAAGAGTTGACTCCTTTTGGATGTTATAATCAGCA 5421 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| |||| | || ||||||||||| |||||||| |||| || ||| ||||| | || Sbjct 5422 AGAGTTCGTCCATCCTCCAACTGCTTTCCGGCAAAGATCAATCTCTGCTGATCAGGAGGG 5481 Query 48660 ACGCCCTCCTTGTC 48673 | ||| ||||| || Sbjct 5482 ATGCCTTCCTTATC 5495 >seq109654 Length=28343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||||| ||| | ||| |||| ||||| ||||| || ||||| Sbjct 17773 CTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGACCGTCCTCCAATTGCTTCCCTGCAAA 17832 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || || | || | ||| |||||||| || || |||||| Sbjct 17833 GATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGGATTTTAGCCTTTACATT 17892 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||||||||||| || || ||||| ||||| | || || || Sbjct 17893 ATCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTTTTGCCCGTAAGGGTCTTCAC 17952 Query 48755 AAAAATCTGCATC 48767 || || |||||| Sbjct 17953 GAAGATTTGCATC 17965 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || | |||||| || || || ||| || ||||| ||||| |||| Sbjct 17966 CCACCCCTCAAACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCA 18025 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || ||||||||||| ||||| || ||||| || || || || | |||| Sbjct 18026 AGGGTACGGCCATCCTCCAACTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCTGGGGGA 18085 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| || || | | | ||||| |||||| Sbjct 18086 ATTCCCTCCTTGTCCTGAATCTTAGCCTTAACGTTGTCGATTGTGTCTGAGCTTTCCACC 18145 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || || | || || ||||| |||||||| Sbjct 18146 TCGAGGGTGATGGTCTTCCCTGTGAGGGTCTTGACAAAGATCTGCAT 18192 >seq97568 Length=18938 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||||||||| ||| || | ||| || || ||| ||||| || || ||||| | Sbjct 7134 CCTCCCCTTAGCCTCAAAACAAGATGAAGAGTTGACTCCTTTTGGATGTTATAATCCGCA 7075 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| |||| | || ||||||||||| |||||||| |||| || ||| ||||| | || Sbjct 7074 AGAGTTCGTCCATCCTCCAACTGCTTTCCGGCAAAGATCAATCTCTGCTGATCAGGAGGG 7015 Query 48660 ACGCCCTCCTTGTC 48673 | ||| ||||| || Sbjct 7014 ATGCCTTCCTTATC 7001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380322556721748