Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq58005 132 1e-25 seq81313 109 1e-18 seq36147 93.3 1e-13 >seq58005 Length=4068 Score = 132 bits (146), Expect = 1e-25 Identities = 408/618 (66%), Gaps = 29/618 (5%) Strand=Plus/Minus Query 186541 GCAACCGCTGGTGCAACTT-CTGCTGGTAACATCGCTACACTAAACAAGGTAATTCTACC 186599 ||||||||||||||||| | || ||||||||||| || | |||||| | || || || Sbjct 605 GCAACCGCTGGTGCAACCAGCAGC-GGTAACATCGCAACGATCAACAAGATGATCCTGCC 547 Query 186600 TATTATTCGTCGTGTAATGCCAACCGTTATTGCTAATGAAATCATCGGTGTTCAACCAAT 186659 | | ||||| || |||||||| ||||| || || || |||||||| | || || | Sbjct 546 CGTGCTGCGTCGCGTGATGCCAACTGTTATCGCCAACGAGATCATCGGCATCCAGCCGCT 487 Query 186660 GACCGGCCCTGTTGGTCAAATCCATACCCTACGTGTACAATACGCTGATAAC------GC 186713 |||| ||||||||| ||| ||||| ||||| | || | ||| || | | | Sbjct 486 GACCAGCCCTGTTGCTCAGATCCACACCCTGCCCGTTCGCTACAGCGACACCGTTGGTGG 427 Query 186714 TCCAGGTGTTGT---TGCAGGTGAAGAAGCTCTATCACCATACAAAATCGCTAAGTC-TT 186769 | ||| || || ||| ||| || || | |||||| | |||||| ||| | Sbjct 426 TGCAGCTGGCGTAACTGCTGGTACTGAGGCGTTCAGCCCATACGACATCGCT-CGTCACT 368 Query 186770 ATACTGGTGAAATTAACTCTGACAATACCGCACCACGTGCTGCACCAACTTCTCAA--CT 186827 | | ||| | ||| ||| |||| ||| | ||||| ||||| | ||| || Sbjct 367 ACAGCGGTAACGAGAACCCTG-CAAT-----GCCAGGCGCTGCTCCAAC--CGCAACTCT 316 Query 186828 AGAAGGTGTTATGGGTCGTCGTGTTAACATCCGTATTCTACGTGAAACCGTAGAAGCTCA 186887 ||||| | ||| || | | ||||| || || || ||||| || ||| Sbjct 315 GGAAGGCCGTCCGGGCAACCGCATGAGCATCCAGATCCTGAAGGAGACCGT-TCAGGTCA 257 Query 186888 A-TCTCGTCGTCTATCTGCTCGTTGGACTGTTGAATCTGCACAAGATGCACAAGCTCAAC 186946 | | |||||||| || || ||||||||| | || | || || ||| | || ||||| | Sbjct 256 AGACCCGTCGTCTGTCCGCACGTTGGACTTTCGAGGCCGCTCAGGATTCGCAGGCTCAGC 197 Query 186947 ACGGTATTGACGTTGAAGCTGAACTAATGGCTGCAATCGCTCAAGAAATCACTACTGAGA 187006 | || || ||| | || ||||| | |||||||| |||| || ||||||||| |||| | Sbjct 196 AGGGCATCGACATCGAGGCTGAGGTGATGGCTGCTCTCGCGCAGGAAATCACTGCTGAAA 137 Query 187007 TCGACCAAGAACTACT-AGCTCGTCTACGTGCTCTACCAGGTGCTNNNNNNNNNNNTTAC 187065 ||||||| || | | | |||| || ||| ||| ||||| | ||| Sbjct 136 TCGACCAGGAGATCTTGACCTCG-CTGCGTCGTCTGCCAGGCACCCCTGGTGCTGTGTAC 78 Query 187066 GATCAATCTAAAGTTACTGGTGTTGCTACCTTCGTTGGTGATGAACATGCTGCTCT-AGC 187124 || || || | ||| ||| |||||||| ||||| || || ||||| || ||| Sbjct 77 GACCAGAGCGCTGTCTCCGGTACTGCGACCTTCGTCGGTGACGAGCACGCTGCCCTCAGC 18 Query 187125 TACTCTAATCAACCGTCA 187142 ||| ||||||||||| Sbjct 17 -GTTCTGATCAACCGTCA 1 >seq81313 Length=11173 Score = 109 bits (120), Expect = 1e-18 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 324511 ATATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTC 324570 ||||||||| ||||||||| |||||||||| |||||||||||| || ||||||||||||| Sbjct 9016 ATATGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTC 9075 Query 324571 GAACCCGTTTAGCTCCAC 324588 || ||||||| ||||||| Sbjct 9076 GATCCCGTTTGGCTCCAC 9093 >seq36147 Length=2497 Score = 93.3 bits (102), Expect = 1e-13 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 324511 ATATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTC 324570 || |||||||||||||||| |||||||||| ||| | ||| | | ||||||||||||| Sbjct 2319 ATTTGGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAACGGTTC 2378 Query 324571 GAACCCGTTTAGCTCCACAAA 324591 || ||||||||||||||| || Sbjct 2379 GATCCCGTTTAGCTCCACCAA 2399 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 ||||||||||||||| |||||||||| ||| | ||| | | ||||||||||||||| | Sbjct 2043 GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAACGGTTCGATC 2102 Query 324575 CCGTTTAGCTCCACAAA 324591 |||||||||||||| || Sbjct 2103 CCGTTTAGCTCCACCAA 2119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1145642538869048