Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= NC_019406.1
Length=279967
Score E
Sequences producing significant alignments: (Bits) Value
seq25831 116 7e-21
seq16106 95.1 2e-14
seq21023 84.2 4e-11
>seq25831
Length=1675
Score = 116 bits (128), Expect = 7e-21
Identities = 190/269 (71%), Gaps = 11/269 (4%)
Strand=Plus/Plus
Query 171670 ACGATCTCGGGCAGTTCGTAGATCGGACCGA--TCAGCATCATGCCGGCGAGCGCCAGGA 171727
||| | ||||||| ||| | |||||||| ||||||| || |||| ||||| | ||
Sbjct 1208 ACGGTTTCGGGCACTTC--AACCCGGACCGAGATCAGCATGATCGCGGCCAGCGCGATGA 1265
Query 171728 TTGCCCAGAAGGCTCCCATCTCCAGGTGCGGGAACTCGGTCAGCGTGCCGCGATCAACCG 171787
| || |||| || || ||||||| | | ||||||||||| || ||| |||
Sbjct 1266 TGGCGTAGAATGCGCCGTGTTCCAGGTAGCGATATTCGGTCAGCGTTCCCTTATCGACCA 1325
Query 171788 CCAGCAGCGTCAGTTCCCGAACGGCCAGGGCGCCCACGCCGAGACCCA---CCATGATCC 171844
|| || ||||| ||| ||| || ||| || | ||| || || | | |||||
Sbjct 1326 GCATCACCGTCATCGACCGGACGAACATGGCACCGATGCCCAGCCCGAGTGCGATGAT-- 1383
Query 171845 AGACGATGTTGCTCGTCAGTGCGAAGGCGCCGATGACGCCGTCAAACGAGAAGCTGGCGT 171904
|| | |||| ||| ||| ||||| || ||||| || || || ||||||||||||||||
Sbjct 1384 -GAACAGGTTGTTCGACAGCGCGAACGCACCGATCACCCCATCGAACGAGAAGCTGGCGT 1442
Query 171905 CCAGGACTTCCAGGTAGATGAA-GCCGCC 171932
|||| || || || |||| ||| ||||||
Sbjct 1443 CCAGCACCTCGAGATAGAGGAACGCCGCC 1471
Score = 84.2 bits (92), Expect = 4e-11
Identities = 145/210 (69%), Gaps = 8/210 (4%)
Strand=Plus/Plus
Query 171096 TAGGCGTTGCGGACCAGACCGAAGTTCTGGTTGCGGGCAGCGGCTTCGTGGATCGTCACG 171155
||||||||| |||| ||||| |||||| ||| | |||||||||||||||||||
Sbjct 52 TAGGCGTTGGACACCATGCCGAAATTCTGGCGGCGCCCCTCGGCTTCGTGGATCGTCACC 111
Query 171156 GCGACGATGATCTCGTCGACGGCCGGGTTCAGCAGGCTGGT----GTCGATGGTGATGCG 171211
|||| | ||| || | || | | | ||| | |||| | | ||| | | |
Sbjct 112 GCGAAGCTGAGCTTCTGGATGTCGG----CAGGAAGCTGATCGAGGCCGACGACCACGAC 167
Query 171212 CTCATCATCGCCAGCGCCGTCGCCGGTCAGGTTGTCGCCCGAGTGGACGATCGCGCCGTC 171271
||| |||||||| || ||||| ||||| |||||||| ||||||| ||||||||
Sbjct 168 CTCGTCATCGCCGCTACCCTCGCCAGTCAGATTGTCGCCTTGATGGACGACCGCGCCGTT 227
Query 171272 GGCGGACTTCAGGTTGCCGTAGAACACGAA 171301
||| ||| |||| |||||| | |||
Sbjct 228 CGCGCCGTTCTTGTTGTTGTAGAAGATGAA 257
>seq16106
Length=1239
Score = 95.1 bits (104), Expect = 2e-14
Identities = 76/90 (84%), Gaps = 4/90 (4%)
Strand=Plus/Plus
Query 69054 TCTCATGTGGCGGAACTGGTAAACGCACCGGACTGTTAATCCGGCGTCTCGCAAGAGACT 69113
|| || ||||||||| |||||||||||||| ||||||||| || || |||| || ||
Sbjct 1048 TCCCAGGTGGCGGAATTGGTAAACGCACCGCACTGTTAATGCGACG--CCGCA--AGGCT 1103
Query 69114 TGGGGGTTCGAAGCCCTCCGTGAGAGCCAA 69143
||||||||||||||||||| || |||||||
Sbjct 1104 TGGGGGTTCGAAGCCCTCCCTGGGAGCCAA 1133
>seq21023
Length=1382
Score = 84.2 bits (92), Expect = 4e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022
|||||||||||||| |||||||||||| ||||||||||| |||||| |||||||||
Sbjct 1019 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCACAGGTTCAAAT 960
Query 133023 CCCTCCCCCGCATCCA 133038
|| ||||||| |||
Sbjct 959 CCTGTCCCCGCAACCA 944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 894283055629920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |