Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq25831 116 7e-21 seq16106 95.1 2e-14 seq21023 84.2 4e-11 >seq25831 Length=1675 Score = 116 bits (128), Expect = 7e-21 Identities = 190/269 (71%), Gaps = 11/269 (4%) Strand=Plus/Plus Query 171670 ACGATCTCGGGCAGTTCGTAGATCGGACCGA--TCAGCATCATGCCGGCGAGCGCCAGGA 171727 ||| | ||||||| ||| | |||||||| ||||||| || |||| ||||| | || Sbjct 1208 ACGGTTTCGGGCACTTC--AACCCGGACCGAGATCAGCATGATCGCGGCCAGCGCGATGA 1265 Query 171728 TTGCCCAGAAGGCTCCCATCTCCAGGTGCGGGAACTCGGTCAGCGTGCCGCGATCAACCG 171787 | || |||| || || ||||||| | | ||||||||||| || ||| ||| Sbjct 1266 TGGCGTAGAATGCGCCGTGTTCCAGGTAGCGATATTCGGTCAGCGTTCCCTTATCGACCA 1325 Query 171788 CCAGCAGCGTCAGTTCCCGAACGGCCAGGGCGCCCACGCCGAGACCCA---CCATGATCC 171844 || || ||||| ||| ||| || ||| || | ||| || || | | ||||| Sbjct 1326 GCATCACCGTCATCGACCGGACGAACATGGCACCGATGCCCAGCCCGAGTGCGATGAT-- 1383 Query 171845 AGACGATGTTGCTCGTCAGTGCGAAGGCGCCGATGACGCCGTCAAACGAGAAGCTGGCGT 171904 || | |||| ||| ||| ||||| || ||||| || || || |||||||||||||||| Sbjct 1384 -GAACAGGTTGTTCGACAGCGCGAACGCACCGATCACCCCATCGAACGAGAAGCTGGCGT 1442 Query 171905 CCAGGACTTCCAGGTAGATGAA-GCCGCC 171932 |||| || || || |||| ||| |||||| Sbjct 1443 CCAGCACCTCGAGATAGAGGAACGCCGCC 1471 Score = 84.2 bits (92), Expect = 4e-11 Identities = 145/210 (69%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 171096 TAGGCGTTGCGGACCAGACCGAAGTTCTGGTTGCGGGCAGCGGCTTCGTGGATCGTCACG 171155 ||||||||| |||| ||||| |||||| ||| | ||||||||||||||||||| Sbjct 52 TAGGCGTTGGACACCATGCCGAAATTCTGGCGGCGCCCCTCGGCTTCGTGGATCGTCACC 111 Query 171156 GCGACGATGATCTCGTCGACGGCCGGGTTCAGCAGGCTGGT----GTCGATGGTGATGCG 171211 |||| | ||| || | || | | | ||| | |||| | | ||| | | | Sbjct 112 GCGAAGCTGAGCTTCTGGATGTCGG----CAGGAAGCTGATCGAGGCCGACGACCACGAC 167 Query 171212 CTCATCATCGCCAGCGCCGTCGCCGGTCAGGTTGTCGCCCGAGTGGACGATCGCGCCGTC 171271 ||| |||||||| || ||||| ||||| |||||||| ||||||| |||||||| Sbjct 168 CTCGTCATCGCCGCTACCCTCGCCAGTCAGATTGTCGCCTTGATGGACGACCGCGCCGTT 227 Query 171272 GGCGGACTTCAGGTTGCCGTAGAACACGAA 171301 ||| ||| |||| |||||| | ||| Sbjct 228 CGCGCCGTTCTTGTTGTTGTAGAAGATGAA 257 >seq16106 Length=1239 Score = 95.1 bits (104), Expect = 2e-14 Identities = 76/90 (84%), Gaps = 4/90 (4%) Strand=Plus/Plus Query 69054 TCTCATGTGGCGGAACTGGTAAACGCACCGGACTGTTAATCCGGCGTCTCGCAAGAGACT 69113 || || ||||||||| |||||||||||||| ||||||||| || || |||| || || Sbjct 1048 TCCCAGGTGGCGGAATTGGTAAACGCACCGCACTGTTAATGCGACG--CCGCA--AGGCT 1103 Query 69114 TGGGGGTTCGAAGCCCTCCGTGAGAGCCAA 69143 ||||||||||||||||||| || ||||||| Sbjct 1104 TGGGGGTTCGAAGCCCTCCCTGGGAGCCAA 1133 >seq21023 Length=1382 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||||| ||||||||| Sbjct 1019 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCACAGGTTCAAAT 960 Query 133023 CCCTCCCCCGCATCCA 133038 || ||||||| ||| Sbjct 959 CCTGTCCCCGCAACCA 944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 894283055629920