Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq26725 199 1e-46 seq24404 105 2e-18 >seq26725 Length=1775 Score = 199 bits (220), Expect = 1e-46 Identities = 479/716 (67%), Gaps = 8/716 (1%) Strand=Plus/Minus Query 12834 TCTGGGTGGCGTTCGGAAACCCGACGCGTAACACCGGGCGTTTCCGCGAATGTTTCCGCA 12893 ||||| | | ||||| ||||| || || | |||||| || ||||| || || | |||| Sbjct 1082 TCTGGTTCGTCTTCGGCAACCCCACCCGGACCACCGGCCGCTTCCGTGAGTGCTGGCGCA 1023 Query 12894 AATATAAACACCGCTGGAAAACTGCGCAGATTGACAGCCGGACGGTGGAAGGCACTAACA 12953 | | || |||||||| || ||||| |||||||| || | || |||| Sbjct 1022 AGTTCCGCCATCGCTGGAAGACCCGTCAGATCGACAGCCGCCAGGCCAAGATGACGAACA 963 Query 12954 AACAGCAGTTGCAGAAATGGGTTGATGACTACGGGGAAGACAGCGACTTCGTTAAAATCC 13013 | | | | | || | |||| || |||||||| ||||| ||||||| | || | | Sbjct 962 AGGACCTGATCAAGCAGTGGGCTGCCGACTACGGCGAAGAGTCCGACTTCTTCAAGGTTC 903 Query 13014 GTGTGCGCGGCATATTCCCTGATGCATCTGAATTGCAGTTTATCCCTACCGGCCTTACTG 13073 | ||||| ||| | ||||| ||| ||||| ||||||| ||| || || || |||| Sbjct 902 GCGTGCGTGGCCTGTTCCCGTCTGCGTCTGACCTGCAGTTCATCGGTAGCGATCTGACTG 843 Query 13074 ACGAGGCAATGAAACGGGTGGTCACCGCTGCGCAGGTTGCACATGCTCCGGTGATAATCG 13133 ||| | ||| | || ||| |||| || ||| ||||| || | || |||| Sbjct 842 ACGCCGGCATGGATCGCACGGTGACCGAGGCCATGGTCAGCCATGCGCCAATCATCATCG 783 Query 13134 GTGTTGACCCAGCATATTCAGGCGTTGATGACGCGGTGATATACCTGCGGCAGGGGCTAC 13193 | || || ||| | | || || | ||||| | ||| |||||||| ||||| || | Sbjct 782 GCGTGGATCCATCCTGGTCCGGTGAGGATGAGTTCGCGATCTACCTGCGCCAGGGCCTGC 723 Query 13194 ACAGTAAGGTGCTGTGGACTGGCAACAAGACTACCGACGATCTGATTATGGCGAAGCGTA 13253 |||| ||| || | | || | |||| |||||| || | ||||| || | Sbjct 722 ACAGCAAGCTGATCGGCACCTATCAGAAGAGCGACGACGACGTGCTCATGGCCGGTCGGA 663 Query 13254 TCGCTGACTTTGAAGACCAGTATCAGGCTGACGCGGTGTTCATCGACTTCGGTTACGGAA 13313 || | | | || |||||||| |||||||||| |||||| ||||||| || ||||| | Sbjct 662 TCTCGCAGCTGGAGGACCAGTACAAGGCTGACGCTGTGTTCGTCGACTTTGGCTACGGCA 603 Query 13314 CCGGTTTGAAGTCAATCGGT-GATGGCTGGGGACGTACA-TGGCAACTTGTTCCGTTCGG 13371 |||| | || ||| || | |||||| ||| ||| || || | |||||| Sbjct 602 CCGGCATCGTATCGGCCGGCCGAGCGATGGGGAG--ACAGTGGACGCTGGTCCAGTTCGG 545 Query 13372 CGGTGCGTCCACTGACCCGCAGATGCTTAACAAGCGCGGGGAGATGTTCAAC-TCATGTA 13430 ||||| || || || ||| ||||| ||||||||||| ||||| | ||| |||| | Sbjct 544 TGGTGCTTCAACCGATCCGGCCATGCTGAACAAGCGCGGCGAGATCTGGAACGCCATG-A 486 Query 13431 AGACATGGCT-GAGGCTGGGCGGCATGCTGGATGACCAGGAAACTGCAGACGACCTGTCG 13489 || |||||| ||||| ||||| |||| | |||| | | || || || || | | Sbjct 485 AGGAATGGCTCAAGGCT-GGCGGTGAGCTGAACGACCGGCAGACCGCTGATGAGATCTGC 427 Query 13490 GCGGCAGAGTACAAAGTTCGTGTGGACGGTAAAATCGTTATCGAACCGAAGGAAGA 13545 || | |||||||| || || ||||||| || ||||| | ||| | ||||| || Sbjct 426 GCCCCTGAGTACAAGGTCCGCCTGGACGGCAAGATCGTGCTGGAAGCCAAGGATGA 371 >seq24404 Length=1558 Score = 105 bits (116), Expect = 2e-18 Identities = 166/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 20801 GCCAAATACCCAAATCGGAAATGCCGCCTGATCCCGTTCCAGTTCTCGACGGTTCAGACT 20860 ||||| ||||| | || || ||||| |||||||||||| ||||| || | ||||| Sbjct 1255 GCCAAGTACCCGGACCGCAAGTGCCGGCTGATCCCGTTCGAGTTCAGCACCGAGCAGACC 1314 Query 20861 TATGCTCTGGAGTTCGGACACCAGTACATGCGCGTTATCAAAGATGGTGCGTTGGTGCTG 20920 || | ||||||||||| ||||||||||| ||| | |||| |||| | | ||||| Sbjct 1315 TACGTCCTGGAGTTCGGTCACCAGTACATCCGCTTCATCACCAATGGCGGCTACCTGCTG 1374 Query 20921 AACAGCAGCAATGTTATTTATGAAATTGCCACGCCATATACTGAAGCCGATCTGTTCCGA 20980 |||| | || | || | || || ||||||| || |||||||| |||||| Sbjct 1375 AACATCGGCCA---GATCTTCGAGATCTCCACGCCCTACGTGGAAGCCGACCTGTTCAAC 1431 Query 20981 ATTAAATTCACGCAAAGCGCTGACGTGCTTACGCTGGTTCACCCGGCATACCCGCCG 21037 | || | ||| || |||||||||||| || | | |||||| | ||| | ||| Sbjct 1432 CTGAACTACACCCAGTCCGCTGACGTGCTGACCATCGCTCACCCTGGCTACGCACCG 1488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142961944698352