Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq109206 136 7e-27
seq26752 100 5e-16
>seq109206
Length=27697
Score = 136 bits (150), Expect = 7e-27
Identities = 559/867 (64%), Gaps = 32/867 (4%)
Strand=Plus/Plus
Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899
||||| || || || || |||||||||||||| ||||| |||| |||||| || ||||
Sbjct 7721 TGGTACTCTCCAACCCTCTTCTCAAAGAAGTTGGTCTTACCCTGCAACGATATCAGCTCC 7780
Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCC--GTGTCAGGCCCATCTGTTCCAGCA 47957
|| | |||||||| | | || || | | | || | |||| | |||| ||
Sbjct 7781 ATCCAATCAAAGGGGTTCTGGGCATTGTAGATCTTGGCGTAA--CCCAACGCATCCATCA 7838
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
|||| || ||| ||||||| || || |||| || |||||| || | | |
Sbjct 7839 ATCGATCAGCCACGAACTCGATATACTTGCACATAAGATCACCGTTCATACCCACCAACG 7898
Query 48018 ACACG-GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076
||| |||| ||| | || |||||| |||| || | ||||| || | | ||
Sbjct 7899 -CACAAGGCAGAGCATCACAGACGAACTCCCTCTCGATATCAACGGCATCGCGGATGATT 7957
Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136
| | || || ||| | || || ||| || || || |||| || ||
Sbjct 7958 CCCCTGACTCGCTCCTCGCTCAGCTTCTTCTTCAGAAGCGTG---TAAAGCAAACACGCG 8014
Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196
|| || | ||| || ||||| || || || | | |||| ||||| |||||| |||
Sbjct 8015 AAATCGCAGTGTAACCCTTCATCTCGCGATATCAACTCGTTAGAGAACGTGAGACCCGGC 8074
Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256
|| | ||| | | || ||||| || || || ||| || ||||||||||| |||
Sbjct 8075 ATCAACCCGCGTTTCTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCC 8134
Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA-GATCCA 48315
|| || ||||||||| | | || ||| ||||||| |||| | | ||||||
Sbjct 8135 TCGACGCAGGCGAACGCGATCAACCGCTCCGCGAAAGA----TTCTGAGCCGTCGATCCA 8190
Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375
| ||||| | |||||||| | || || || ||||| ||||| | |||||
Sbjct 8191 CCTCATGGCCCACTGAGCCTTCTTGGCCACACAAGGAATGGTCTCGATGGCGTGAAAGAG 8250
Query 48376 C---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432
||||| |||| | | ||| || || || | || |||||||||
Sbjct 8251 GCGGTTCTT---CTCAGCCGGGTCTTTAATGTAAGTCTCCAACAAGAGACTGTACATCTC 8307
Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492
|||||| | |||||| ||||||||||||||||| || ||||| | ||||| || ||
Sbjct 8308 AGAGTGAATATTCTCGATAGCGATCTGGAACCCATAAAAGGCACGCGCCTCCGCGACTTG 8367
Query 48493 CACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551
| || | ||| || ||| || |||||||| || || || ||||| || ||||
Sbjct 8368 AATCTCCTTCATGAACCT-TCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGCGGCAA 8426
Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT-TCCAGCCC 48610
|||| ||||| ||||| || ||| || ||| | | | || ||| | | ||
Sbjct 8427 AGAAAGCAAGAACATGGGAAATGAAGTGCTTCTCATCGGGAGT-----CATGTTCTCCCA 8481
Query 48611 T---GTA-CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTT 48666
| ||| ||||| | || ||||| || ||| | |||||||| || || || ||
Sbjct 8482 TTGGGTATTGTCTTGGGAGAGATCCACCTCCTCCGCCGTCCAGAACGAGGCCTCGGCCTT 8541
Query 48667 TTTGTACATGCCCCATATGTCCGGATA 48693
|||||||| |||| || ||||| ||
Sbjct 8542 CTTGTACATCTCCCAAATCTCCGGGTA 8568
>seq26752
Length=1779
Score = 100 bits (110), Expect = 5e-16
Identities = 275/416 (66%), Gaps = 14/416 (3%)
Strand=Plus/Plus
Query 213994 TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATAT 214053
||||| ||| || || | ||| || || |||||||| || ||||| || | || |
Sbjct 47 TGTTGTAGACACGAAGCATGGGCACGAGACCGTTGGAAGTGCCATTGGTGCCACCAATGT 106
Query 214054 ACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGA 214113
| | ||| | ||| | | | | || ||| || || ||||| |||| ||||||||
Sbjct 107 AAGCGCCAGTGGCACGAATGCGGTGAGTGTTGAGACCAATACCACCAGCGTTCTTGGAGA 166
Query 214114 TCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCA 214173
||||||||||| | | | ||| || ||| || | ||||||||||| | | || |
Sbjct 167 TCATGGCGCAGATCTTGAGAGTATCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGA 226
Query 214174 GCAAGAAGCAGCTCGAGAGCTGGGGCCTG-GACGAGCCAGAGTTGAAAAGCGTGGGGCTG 214232
| |||||| || |||| | ||||| | | || | | |||| ||||| ||| |
Sbjct 227 TGAGGAAGCAAGACGCCAGCT-GTGCCTGAGGGGTACCTGCGCTGAAGAGCGTAGGGGAG 285
Query 214233 GCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGG---GGATG 214289
||||| | | ||||||| || | | |||||||||| || || || ||||
Sbjct 286 GCATGTGTGAAGTACTTGTTGGACATGTAGTTGTAGGTCTC---GATTGCGGCCTCGATG 342
Query 214290 TCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGT 214349
|||| |||||| | ||| | ||| | ||||||||| || ||||| ||
Sbjct 343 TCGTCGCCGTGGATGCCGACAGCAACACGCATGATCATGTGCTGTGGTCTCTC---GGCA 399
Query 214350 CCTTTGGGGCCCTT---GAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTA 214402
||||| | | | ||| || || |||||||| || |||||||| ||||||||
Sbjct 400 ACTTTGCCGTCAATGCGGAGAAGATATGAGCGCTCGAGCGTCTTGAAGCCAAAGTA 455
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 929990228259840
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