Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq109206 136 7e-27 seq26752 100 5e-16 >seq109206 Length=27697 Score = 136 bits (150), Expect = 7e-27 Identities = 559/867 (64%), Gaps = 32/867 (4%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || || || || |||||||||||||| ||||| |||| |||||| || |||| Sbjct 7721 TGGTACTCTCCAACCCTCTTCTCAAAGAAGTTGGTCTTACCCTGCAACGATATCAGCTCC 7780 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCC--GTGTCAGGCCCATCTGTTCCAGCA 47957 || | |||||||| | | || || | | | || | |||| | |||| || Sbjct 7781 ATCCAATCAAAGGGGTTCTGGGCATTGTAGATCTTGGCGTAA--CCCAACGCATCCATCA 7838 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 |||| || ||| ||||||| || || |||| || |||||| || | | | Sbjct 7839 ATCGATCAGCCACGAACTCGATATACTTGCACATAAGATCACCGTTCATACCCACCAACG 7898 Query 48018 ACACG-GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| |||| ||| | || |||||| |||| || | ||||| || | | || Sbjct 7899 -CACAAGGCAGAGCATCACAGACGAACTCCCTCTCGATATCAACGGCATCGCGGATGATT 7957 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | | || || ||| | || || ||| || || || |||| || || Sbjct 7958 CCCCTGACTCGCTCCTCGCTCAGCTTCTTCTTCAGAAGCGTG---TAAAGCAAACACGCG 8014 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 || || | ||| || ||||| || || || | | |||| ||||| |||||| ||| Sbjct 8015 AAATCGCAGTGTAACCCTTCATCTCGCGATATCAACTCGTTAGAGAACGTGAGACCCGGC 8074 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 || | ||| | | || ||||| || || || ||| || ||||||||||| ||| Sbjct 8075 ATCAACCCGCGTTTCTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCC 8134 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA-GATCCA 48315 || || ||||||||| | | || ||| ||||||| |||| | | |||||| Sbjct 8135 TCGACGCAGGCGAACGCGATCAACCGCTCCGCGAAAGA----TTCTGAGCCGTCGATCCA 8190 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 | ||||| | |||||||| | || || || ||||| ||||| | ||||| Sbjct 8191 CCTCATGGCCCACTGAGCCTTCTTGGCCACACAAGGAATGGTCTCGATGGCGTGAAAGAG 8250 Query 48376 C---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 ||||| |||| | | ||| || || || | || ||||||||| Sbjct 8251 GCGGTTCTT---CTCAGCCGGGTCTTTAATGTAAGTCTCCAACAAGAGACTGTACATCTC 8307 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 |||||| | |||||| ||||||||||||||||| || ||||| | ||||| || || Sbjct 8308 AGAGTGAATATTCTCGATAGCGATCTGGAACCCATAAAAGGCACGCGCCTCCGCGACTTG 8367 Query 48493 CACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 | || | ||| || ||| || |||||||| || || || ||||| || |||| Sbjct 8368 AATCTCCTTCATGAACCT-TCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGCGGCAA 8426 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT-TCCAGCCC 48610 |||| ||||| ||||| || ||| || ||| | | | || ||| | | || Sbjct 8427 AGAAAGCAAGAACATGGGAAATGAAGTGCTTCTCATCGGGAGT-----CATGTTCTCCCA 8481 Query 48611 T---GTA-CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTT 48666 | ||| ||||| | || ||||| || ||| | |||||||| || || || || Sbjct 8482 TTGGGTATTGTCTTGGGAGAGATCCACCTCCTCCGCCGTCCAGAACGAGGCCTCGGCCTT 8541 Query 48667 TTTGTACATGCCCCATATGTCCGGATA 48693 |||||||| |||| || ||||| || Sbjct 8542 CTTGTACATCTCCCAAATCTCCGGGTA 8568 >seq26752 Length=1779 Score = 100 bits (110), Expect = 5e-16 Identities = 275/416 (66%), Gaps = 14/416 (3%) Strand=Plus/Plus Query 213994 TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATAT 214053 ||||| ||| || || | ||| || || |||||||| || ||||| || | || | Sbjct 47 TGTTGTAGACACGAAGCATGGGCACGAGACCGTTGGAAGTGCCATTGGTGCCACCAATGT 106 Query 214054 ACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGA 214113 | | ||| | ||| | | | | || ||| || || ||||| |||| |||||||| Sbjct 107 AAGCGCCAGTGGCACGAATGCGGTGAGTGTTGAGACCAATACCACCAGCGTTCTTGGAGA 166 Query 214114 TCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCA 214173 ||||||||||| | | | ||| || ||| || | ||||||||||| | | || | Sbjct 167 TCATGGCGCAGATCTTGAGAGTATCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGA 226 Query 214174 GCAAGAAGCAGCTCGAGAGCTGGGGCCTG-GACGAGCCAGAGTTGAAAAGCGTGGGGCTG 214232 | |||||| || |||| | ||||| | | || | | |||| ||||| ||| | Sbjct 227 TGAGGAAGCAAGACGCCAGCT-GTGCCTGAGGGGTACCTGCGCTGAAGAGCGTAGGGGAG 285 Query 214233 GCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGG---GGATG 214289 ||||| | | ||||||| || | | |||||||||| || || || |||| Sbjct 286 GCATGTGTGAAGTACTTGTTGGACATGTAGTTGTAGGTCTC---GATTGCGGCCTCGATG 342 Query 214290 TCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGT 214349 |||| |||||| | ||| | ||| | ||||||||| || ||||| || Sbjct 343 TCGTCGCCGTGGATGCCGACAGCAACACGCATGATCATGTGCTGTGGTCTCTC---GGCA 399 Query 214350 CCTTTGGGGCCCTT---GAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTA 214402 ||||| | | | ||| || || |||||||| || |||||||| |||||||| Sbjct 400 ACTTTGCCGTCAATGCGGAGAAGATATGAGCGCTCGAGCGTCTTGAAGCCAAAGTA 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929990228259840