Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq109206 96.9 6e-15 seq26752 93.3 8e-14 >seq109206 Length=27697 Score = 96.9 bits (106), Expect = 6e-15 Identities = 298/449 (66%), Gaps = 19/449 (4%) Strand=Plus/Minus Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGG 25662 || |||||||| ||||| || || || || |||||||| || || |||| | | Sbjct 8433 GCTTTCTTTGCCGCCTCAGACGGCATCGTTTTGGAGAATCTCGCCGGAAGGTTCATGAAG 8374 Query 25663 GAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCATCGAAAATGT 25721 || | || || |||||| ||| || || || |||||||| || ||||| ||| | Sbjct 8373 GAGATTCAAGTCGCGGAGGCGC-GTGCCTTTTATGGGTTCCAGATCGCTATCGAGAATAT 8315 Query 25722 GCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGAG 25778 ||||||||| |||| || || || || || ||||||| |||| || |||| Sbjct 8314 TCACTCTGAGATGTA---CAGTCTCTTGTTGGAGACTTACATTAAAGACCCGGCTGAGAA 8258 Query 25779 AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGC 25838 | || || ||| ||||||||| ||| || | | | |||||| | |||||| Sbjct 8257 GAACCGCCTCTTTCACGCCATCGAGACCATTCCTTGTGTGGCCAAGAAGGCTCAGTGGGC 8198 Query 25839 CATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGC-GAGCGGCTGGTAGCCTTTG-C 25895 ||||| ||||||| || || |||| | ||| || |||||| || | || || | | Sbjct 8197 CATGAGGTGGATCGACGGCTCAGA-----ATCTTTCGCGGAGCGGTTGATCGCGTTCGCC 8143 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGCTCAAGCAGA 25954 ||| || ||||| ||||| ||| ||| | | ||| || || || ||||| ||| | Sbjct 8142 TGC-GTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGC-GCGATATTTTGGCTAAAGAAAC 8085 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 ||| ||||| || || || || |||||| | || | || || || | | Sbjct 8084 GCGGGTTGATGCCGGGTCTCACGTTCTCTAACGAGTTGATATCGCGAGATGAAGGGTTAC 8025 Query 26015 ACAGAGATTTTGCCTGCCTGCTCTACACG 26043 || | ||||| || || |||| |||||| Sbjct 8024 ACTGCGATTTCGCGTGTTTGCTTTACACG 7996 >seq26752 Length=1779 Score = 93.3 bits (102), Expect = 8e-14 Identities = 302/462 (65%), Gaps = 18/462 (4%) Strand=Plus/Plus Query 222217 GTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTA 222276 |||| ||| ||||| | || || || |||||||| || |||||||| |||||| Sbjct 48 GTTGTAGACACGAAGCATGGGCACGAGACCGTTGGAAGTGCCATTGGTGCCACCAATGTA 107 Query 222277 CGCACCGCCGGCCCTCA---GGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGA 222333 || || ||| | | ||| | || || | || |||||||| |||| || || Sbjct 108 AGCGCCAGTGGCACGAATGCGGTGAGTGTT-GAGA--CCAATACCACCAGCGTTCTTGGA 164 Query 222334 GATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTT 222393 ||||||||||||| |||||||||| || ||| ||||| || ||| ||||| | || Sbjct 165 GATCATGGCGCAGATCTTGAGAGTATCGTAGATACCCTCAATGCTGTCATCCTTCATGTC 224 Query 222394 CAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACT 222453 | || || ||||||| || ||| | | | || || ||| | || ||||| || Sbjct 225 GATGAGGAAGCAAGACGCCAGCTGTGCCTGAGGGGTACCTGCGCTGAAGAGCGTAGGGGA 284 Query 222454 GGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC---TACGACTCTGGCGAT 222510 ||| ||||| ||||| | ||||| | ||| ||||| | || | || |||| Sbjct 285 GGCATGTGTGAAGTACTTGTTGGACATGTAGTTGTAGGTCTCGATTGCGGC-CT--CGAT 341 Query 222511 GTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGG 222570 || ||| ||||| || | || | |||| ||||| ||| || |||| | | Sbjct 342 GTCGTCGCCGTGGATGCCGACAGCAACACGCATGATCATGTGCTGTGGTCTCT---CGGC 398 Query 222571 ACCCTTGGAG---CTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTT 222627 | | ||| | || ||| || || || || || |||||||| |||||||| | Sbjct 399 AACTTTGCCGTCAATGCGGAGAAGATATGAGCGCTCGAGCGTCTTGAAGCCAAAGTATTG 458 Query 222628 GAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTC 222669 | || ||||| | | ||| || | ||| | || |||||| Sbjct 459 GTAGTTGAAGTCACGGTCGTAGACAATGGCCGAGTTCAGCTC 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927306679453440