Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019514.1 Length=74669 Score E Sequences producing significant alignments: (Bits) Value seq58572 93.3 2e-14 >seq58572 Length=4186 Score = 93.3 bits (102), Expect = 2e-14 Identities = 174/252 (69%), Gaps = 14/252 (6%) Strand=Plus/Minus Query 17072 CTGCCTCGCAGTGGCCTTGGGCATAAATCTGGCATTGTACTTGGGAACCTGGTGGGTCTG 17131 ||||| ||| |||||| || |||||| ||||| || | || |||||||| || ||| Sbjct 4184 CTGCCGCGCTCTGGCCTGGGCCATAAACACGGCATCGTGTTGGGCAACCTGGTCGGCCTG 4125 Query 17132 ATTGATTCGGACTATCAGGGTGAGCTGAAGGTTTCCCTGTGGAACCG----CAG--CGC- 17184 || ||||||||||| ||||| || |||| ||| || |||||||| ||| ||| Sbjct 4124 ATCGATTCGGACTACCAGGGCGAACTGATGGTGTCATGCTGGAACCGTGGCCAGACCGCG 4065 Query 17185 TGAACCATACACTGTCAGCCCTGGTGAGCGTGTTGCCCAAATGGTTATCGTGCCAGTAGT 17244 | | ||| | ||||| || || || ||||||| |||| | ||||| || || Sbjct 4064 TTCAACAT-CGCTGTC------GGCGAACGCATTGCCCAGTTGGTACTGGTGCCGGTGGT 4012 Query 17245 GCAGGCACAGTTTGAGCTGGTTGATGAATTCACTGCTTCAGAACGTGGAGACGGCGGATT 17304 |||||| || || || ||||| | || || || | |||| || | ||||| || Sbjct 4011 GCAGGCGCACTTCGAACTGGTACAAGAGTTTGATGAAACCCAACGCGGCGCAGGCGGTTT 3952 Query 17305 TGGCCACACCGG 17316 ||| || |||| Sbjct 3951 TGGGCATTCCGG 3940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238430419328680