Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq124742 251 2e-62 >seq124742 Length=51505 Score = 251 bits (278), Expect = 2e-62 Identities = 439/632 (69%), Gaps = 10/632 (2%) Strand=Plus/Plus Query 22737 ATGTGGGCGTCATC-AGCATTCGAGAAAAAAGGCCGGACGGTTCTTGGTCAATGCGAAGA 22795 ||||||||||| || ||| |||||||| | || |||| || || || || ||| | Sbjct 11236 ATGTGGGCGTCGTCTAGC-TTCGAGAAGCAGGGAAGGACAGTCCTGGGCCAGGCCGAGCA 11294 Query 22796 AGTGATGATGCGTGCTGGTGGATGGCAAAAGTCGAGAATGGAACAGCAGATGCATGAATG 22855 || | | || || ||||| ||||| || | ||||||| || |||||||| || || Sbjct 11295 GGTAGCGTTCCGCGCGGGTGGCTGGCAGAAAGCCCGAATGGAGCAACAGATGCACGATTG 11354 Query 22856 GTTCGGGAGAATCCCAGCATTCATTATCACGCTGGCCGCTGACTATTGCGCGGAGTGCTC 22915 |||||| | || || ||||| ||||| ||||||||||||| ||||| ||||| Sbjct 11355 GTTCGGCGATGTGCCGGCCTTCATCATCACCTTGGCCGCTGACTACTGCGCCCAGTGCAG 11414 Query 22916 CGACTTGGATTTCTGCGCGCTGGTAGAACATGAGCTTTACCACATTTGCCACGCTACTGA 22975 |||| | || |||||||| ||| | ||||| ||||| || ||| | |||||||| || Sbjct 11415 CGACCTTGAGTTCTGCGCCCTGATCGAACACGAGCTGTATCACCTGGCTCACGCTACCGA 11474 Query 22976 TGAATTCGGTGCTCCGAAATTTAAACGGGATACCGGATTGCCGGTGCTGAAAATGCGCGG 23035 | | |||| || ||| | | || ||| ||| | | || ||| | Sbjct 11475 CAAGTACGGTCAACCAGCATTCACCCAAGA---CGGTGCACCGAAGATCAAGCTGCAGAG 11531 Query 23036 TCACGATGTTGAGGAATTCGTTGGCGTCGTTCGCCGCTACGGTGCAAGCCGTGACGTGCA 23095 ||||| || || || ||||| || || || ||||||||||||||||||| |||||| || Sbjct 11532 CCACGACGTCGAAGAGTTCGTCGGTGTGGTCCGCCGCTACGGTGCAAGCCCTGACGTTCA 11591 Query 23096 GGAAATGGTTGATGCGGCAAACAATAGGCCGGAAGTGGCTCACGTCGATGTGGCGAGGGC 23155 | |||| ||||| ||||||| | | || |||| | | | | |||||||| Sbjct 11592 AGCGTTGGTGGATGCTGCAAACAGTCCTGCTGAGGTGGGGAAATTGAACATTGCGAGGGC 11651 Query 23156 ATGCGGAACGTGCTTATTAAAATTGGCGTGAAATTTTTGACTG--ATTATGACGAGTGGT 23213 |||||||| || | | | || ||| |||||||| ||| | |||| |||| Sbjct 11652 CTGCGGAACCTGTCTGCTCAGATCGGCCTGAAATTT--GACAGGCATTA-GACGGAATCC 11708 Query 23214 GATTTATGGCGGTACTAAAAGGACACGTTAAGTCATTCATTGTTCAGTCATTAGCCTGCT 23273 ||||||||| || || | | || || ||||| |||||| | || || |||| Sbjct 11709 AATTTATGGCAAACCTGAATAGTGAGGTGAAAGGCTTCATCGTTCAGGCCTTGGCGTGCT 11768 Query 23274 TTGATACCCCATCTCAGGTGGTCGATGCCGTCAATAAAGAATTCGGCATTGCGATTACTC 23333 |||| ||||| ||||||||||| || |||||||| ||||||||||||||| ||| | | Sbjct 11769 TTGACACCCCCTCTCAGGTGGTAGAGGCCGTCAAACAAGAATTCGGCATTGAGATCTCCC 11828 Query 23334 GGCAGCAGGTTGAATCTCATGACCCGACAAAG 23365 | |||| |||||| ||||| |||| ||| Sbjct 11829 GTCAGCTTTGTGAATCGCATGATGCGACCAAG 11860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154687469595392