Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq124742 107 6e-19 >seq124742 Length=51505 Score = 107 bits (118), Expect = 6e-19 Identities = 235/347 (68%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 18488 ACTCGTGGTATGCGAAAGTTTGGTGATAAGTTTGGCCGAATTGGCTTATGGGTGATGAAC 18547 || ||||| ||||| ||||||||||| ||||| ||||| |||| | ||||| ||| || Sbjct 17678 ACCCGTGGCATGCGCAAGTTTGGTGACAAGTTCGGCCGGATTGCGCTGTGGGTCATGCAC 17737 Query 18548 TCAGATACATATTTCGATATTGTCGATGATGCTATCACTAAGCAAATTTACGGTGAATCT 18607 || | || ||||| || ||||| || || ||||| || | || |||| ||| || Sbjct 17738 TCGTCCGCCTACTTCGACATCGTCGACGAAGCCATCACCAACAAGATCTACGAAGAAGCT 17797 Query 18608 GAAATCGTTATCTATGGTGGTTTACCAGGAACCTTAGGAAAGCCGGTATTGGTGACGGAT 18667 | | || |||||||| || | || || || | || ||||| ||| |||| || || Sbjct 17798 GGTGTTGTGATCTATGGCGGCCTGCCGGGCACTCTGGGCAAGCCAGTACTGGTAACCGAC 17857 Query 18668 GCTGTAGGTGATAACGATGCT-TTTGGCTTGCAGTATGGTGCTGTAACAGTAACTGAATC 18726 | | | ||| || | || ||| ||| | || ||||| | || || || Sbjct 17858 ACCGCCCCGGCGGACG-TGATCTTCGGCCTGCTGCCAAACGCCGTAACCATCACCGAGTC 17916 Query 18727 ACAAGTACCGGGCTTCCGAGCTTATGACATCAATGATGAAGAAAACTT-AGCAATCGGTA 18785 || | ||||||||||| | || || | || || ||||| ||||| ||| ||||| Sbjct 17917 GCAGGCCCCGGGCTTCCGTTCCTACGAAGTGAACGACGAAGAGAACTTGAGC-ATCGGCT 17975 Query 18786 TGCGTGCTGAAGGTGCATTTAACCTAGATATTCTTGGTTATAGTTGG 18832 || ||||||||| | | ||| | ||| | || ||||| || ||| Sbjct 17976 ACCGAGCTGAAGGTACCGTGAACATCGATGTGCTGGGTTACAGCTGG 18022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144815024927312