Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq124742 84.2 6e-12 >seq124742 Length=51505 Score = 84.2 bits (92), Expect = 6e-12 Identities = 245/368 (67%), Gaps = 16/368 (4%) Strand=Plus/Plus Query 13928 GCCATCATGGCACACGCTGCAGCGGAATATCCGCGAGAGTGCTGCGGCGTGGTGG-CACA 13986 |||||| ||| ||||| || || | |||||| ||| || |||||| || || ||| Sbjct 28197 GCCATCCAGGCGCACGCGGCGGCCCAGTATCCGAAAGAATGTTGCGGCCTGTTGCTCACC 28256 Query 13987 ----GAAAAGCCGGGTTGAGCGCTATTTTCCCTGTCGTAATCTCGCAGCAGAGCCGACTG 14042 | ||||| | | || || || || || || |||| | ||||||| | Sbjct 28257 ATTGGCAAAGCGCAGAAG-----TACTTCCCGTGCCGGAACATCGCCACCGAGCCGAGCG 28311 Query 14043 AACATTTTCACCTGTCCCCCGAAGATTACGCAGCGGCAGAAGAC-TGGGGGACGGTGGTG 14101 || | || | || |||||||| || || ||||| |||||| |||| || |||| | Sbjct 28312 AAGAGTTCCGGCTCGATCCCGAAGACTATGCCGCGGCGGAAGACCTGGGCGA-GGTGATC 28370 Query 14102 GCCATTGTTCACAGCCATCCTGATGCGACGACGCAGGCCAGCGA-GCTGGATAAGGCGCA 14160 | |||||| ||| || |||||||| || | ||||||| | || || ||| Sbjct 28371 GGCATTGTCCACTCGCACCCTGATGCCACCA-GCAGGCCGTCACCGCATGACTTGGCCAT 28429 Query 14161 GTGTGATGCAACGCTGCTGCCCTGGCATATTGTGAGCTGGCCAGAGGGGGATTTACGTAC 14220 ||| || || ||| |||||||||||| ||| || |||||| ||||| || | || || Sbjct 28430 GTGCGAGGCCACGGCGCTGCCCTGGCACATTTTGTCCTGGCCCGAGGGAGACATGCGCAC 28489 Query 14221 CATTCAGCCACGCGGGGAGC-TGCCATTGCTGGAGCGTCCGTTCGTGCTTGGCCACTTCG 14279 | ||| | |||| ||| ||| |||| | || |||||||| | ||| || | Sbjct 28490 GA-TCACGCCGACGGGCAGCACGCCGCTGCTCAATCGGCCGTTCGTACACGGCGCCTGGG 28548 Query 14280 ATTGCTGG 14287 | |||||| Sbjct 28549 ACTGCTGG 28556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141655203640344