Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019705.1 Length=38759 Score E Sequences producing significant alignments: (Bits) Value seq124742 100 7e-17 >seq124742 Length=51505 Score = 100 bits (110), Expect = 7e-17 Identities = 198/285 (69%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 12040 TATTTCCCCTGCCGCAACCTTTCTGAAGAGCCGACAGAACATTTTCACCTTTCTCCCGAA 12099 || ||||| ||||| ||| | | ||||||| ||| | || | || ||||||| Sbjct 28275 TACTTCCCGTGCCGGAACATCGCCACCGAGCCGAGCGAAGAGTTCCGGCTCGATCCCGAA 28334 Query 12100 GACTACGCAGCTGCCGAAGA-CTGGGGGACGGTGGTAGCCATTGTTCACAGCCACCCTGA 12158 ||||| || || || ||||| ||||| || |||| | | |||||| ||| |||||||| Sbjct 28335 GACTATGCCGCGGCGGAAGACCTGGGCGA-GGTGATCGGCATTGTCCACTCGCACCCTGA 28393 Query 12159 CGCGACGACGCAGGCCAGC-GAGCTTGATAAGGCGCAATGTGATGCAACGCTGCTGCCCT 12217 || || | ||||||| | || ||| ||| || || || ||| |||||||| Sbjct 28394 TGCCACCA-GCAGGCCGTCACCGCATGACTTGGCCATGTGCGAGGCCACGGCGCTGCCCT 28452 Query 12218 GGCATATTGTGAGCTGGCCGGAGGGGGATTTACGCACCATCCAGCCG-CGCGGAGAACTG 12276 |||| ||| || |||||| ||||| || | ||||| ||| |||| || | || || | Sbjct 28453 GGCACATTTTGTCCTGGCCCGAGGGAGACATGCGCACGATCACGCCGACGGGCAGCAC-G 28511 Query 12277 CCACTGCTGGAGCGTCCGTTTGTGCTTGGACACTTCGACTGCTGG 12321 || ||||| | || ||||| || | || || ||||||||| Sbjct 28512 CCGCTGCTCAATCGGCCGTTCGTACACGGCGCCTGGGACTGCTGG 28556 Score = 87.8 bits (96), Expect = 4e-13 Identities = 194/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 15019 GCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15078 ||| |||||| ||| | |||||| || | ||||||||||||||| | | || ||||| Sbjct 34727 GCGCTACGGCGACAACCCGCTGGAGATCAGCGCCATCGGCTGCACCCGCGAATCCGAGGC 34786 Query 15079 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 15138 | || ||| |||| | ||||| || ||||||||| | ||| | || | Sbjct 34787 CCAGCGCCGGGGCAAGTGGGCGCTGCTCACGAACTCCAAGGATCGGGCGGTTACCTTCAA 34846 Query 15139 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15198 ||||| || ||||| ||| |||| ||| || ||| | ||| || | || ||||| || Sbjct 34847 GGTCGGCCTCGACGGGCGCATCCCGCTGCCTGGATACGTGATCCCCATCGCGGACGAACT 34906 Query 15199 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15258 ||| |||| | ||||||| || ||| || || ||||| || |||| || Sbjct 34907 GCTGGCCGGCCGGCCGGTGGGCGGGCGTATCTCAGCGGTGAACGGCAAGGTCATCACCCT 34966 Query 15259 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTTCC 15309 ||||||| | | || || || || || || || |||||||| || Sbjct 34967 GGACCGCGACACCCAAGCCAAGCCCGGCGACCGGCTGATCCTCAACCTGCC 35017 Score = 80.6 bits (88), Expect = 7e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 14327 AAAATCGGCGACACGATGATGCT-GCAGAGCTTCACCGAGGTGATTGATGCCAAACTGCG 14385 || ||| |||||||||| | | || | |||||||||||||||| || ||||| | || Sbjct 34038 AAGATCTCCGACACGATGCAGATTGCCG-GCTTCACCGAGGTGATCGACGCCAAGATCCG 34096 Query 14386 CTACCCGAACACCGCGCTGCTCTACGTCGAATT 14418 |||||||||||||||||||| ||| |||| || Sbjct 34097 ATACCCGAACACCGCGCTGCTTTACATCGAGTT 34129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123712275078552