Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq124121 643 3e-180 seq124742 93.3 1e-14 >seq124121 Length=49848 Score = 643 bits (712), Expect = 3e-180 Identities = 699/925 (76%), Gaps = 8/925 (1%) Strand=Plus/Plus Query 4674 GTCATCAGCAGCGAAGCACTGAAAGCATTCGCGGCAAGCGTGGAAGGCGGTAAGCGCGTC 4733 ||| ||| ||||||||||| ||||| ||||| || ||||| ||||| || |||||| || Sbjct 22471 GTCGTCAAAAGCGAAGCACTCAAAGCCTTCGCCGCCAGCGTCGAAGGTGGCAAGCGCATC 22530 Query 4734 AGCGTACCGGTGAACGCCGCGCTTATTTCCACGGATGTCGTCACCGGCGTGGTTGAACCG 4793 || | ||||||||||| |||||| | || |||||| | | |||| ||| | ||||| Sbjct 22531 AGTATTCCGGTGAACGCAGCGCTTCTGTCGACGGATATTCCCGCCGGTGTGATCGAACCT 22590 Query 4794 CAGCGTCTGCCGGGTATCGACACCGCACCGAAACAGCGCCTTTTCATCCGCGATCTGATC 4853 ||| || || || |||||| | ||| || || ||||| ||||||||||| |||||| Sbjct 22591 ATGCGCCTTCCCGGCATCGACGCTTTACCCAAGCAACGCCTGTTCATCCGCGACCTGATC 22650 Query 4854 GCGCCTGGCCGCACCTCAGCACCGGCCATCTTCTGGGTGCAGCAAACCGGCTTCACCAAT 4913 || || ||||| ||| | || || || || |||||||| || |||||||||||||| || Sbjct 22651 GCCCCAGGCCGAACCACCGCGCCTGCGATTTTCTGGGTCCAACAAACCGGCTTCACTAAC 22710 Query 4914 GCGGCGAAAGTTGTGCCGGAAGGCACCGCCAAGCCGTACAGCGATATCCAGTTCGCCACG 4973 || || |||||||||||||| ||||| || || || |||||||||| || Sbjct 22711 GCCGCCGCTGTTGTGCCGGAAGGGCAAGCCAAACCCTATTCGGACATCCAGTTCGGCATC 22770 Query 4974 CAGATCACGCCGGTCACCACCATCGCGCACATGTTCAAGGCGTCCAAACAGATTCTGGAT 5033 | ||||| | || ||||| |||||||||||||||| || |||| || || || ||| Sbjct 22771 AAAATCACCGCCGTTTCCACCCTCGCGCACATGTTCAAAGCTGCCAAGCAAATCCTTGAT 22830 Query 5034 GACTTCGCGCAGCTGCAGTCCACTATCGACGCCGAGATGCGTTACGGACTGAAGTATGTG 5093 |||||| | || ||||| ||||| |||||| ||||||||| ||||| || ||||| ||| Sbjct 22831 GACTTCACCCAACTGCAATCCACCATCGACATCGAGATGCGCTACGGCCTCAAGTACGTG 22890 Query 5094 GAAGAACAGGAAATTCTCTTTGGCGACGGTACCGGTGCGCACCTGAAAGGCATCGTTCCG 5153 || || | || || || || |||||||| ||||||| ||||| | ||||| || || Sbjct 22891 GAGGAGGATGAGATCCTGTTCGGCGACGGCACCGGTGTCCACCTCCACGGCATAGTGCCC 22950 Query 5154 CAGGCCTCGGCATACGAGGCTGCGTTCGCCGTAGAACAACAGAACGGCATCGACGATCTG 5213 ||||||||||||| || | || || | || || | || ||| || || || ||| Sbjct 22951 CAGGCCTCGGCATTCGCCCCGGCCTTTTCGGTGCAAGAGCAATCCGGTATTGATGACCTG 23010 Query 5214 CGCCTCGCAATGCTGCAGGCTCAGCTGGCACG-CTTCCCGGCTTCC---GGCCACGTCCT 5269 ||||| ||||||||||| || || || || || || ||| ||| ||||| || || Sbjct 23011 CGCCTGGCAATGCTGCAAGCCCAACTCGCGCGACTGCCC----TCCAGTGGCCATGTTCT 23066 Query 5270 GCACTTCATCGACTGGGCGAAGATTGAACTCACCAAAGACACGCTGGGCCGCTATATCCT 5329 |||||| ||||||||||| ||||| || || ||||||||||| |||||||||| || || Sbjct 23067 GCACTTTATCGACTGGGCCAAGATCGAGCTGACCAAAGACACCTTGGGCCGCTACATACT 23126 Query 5330 GGCGAACCCAGCGGCCCTGACTGGCCCTACCCTTTGGGGCCTGCCGGTGGTAGCAACCGA 5389 || ||||| || ||| |||| ||| | ||||||||||| ||||| || ||||| Sbjct 23127 CGCCAACCCTCTGGGCCTCGCTGGGCCTGTGTTGTGGGGCCTGCCAGTGGTGGCGACCGA 23186 Query 5390 AGCCGCAGCATTCCAGGGCAAGTTCCTGACCGGTGCATTCAACGCTGCGGCACAGCTGTT 5449 ||| | || | ||||||||||||||||| || ||| ||| || ||| |||| Sbjct 23187 GGCCAGTGGGTTTGAAGGCAAGTTCCTGACCGGCGCCTTCCGTACTGGCGCGCAGTTGTT 23246 Query 5450 TGACCGTGAAGACGCCAACGTGGTGATCTCCACTGAGAACGCCGACGACTTTGAGAAAAA 5509 ||||| |||||||| ||||| |||||| ||| |||||||| |||||||| |||||||| Sbjct 23247 CGACCGGGAAGACGCTAACGTAGTGATCAGCACCGAGAACGCGGACGACTTCGAGAAAAA 23306 Query 5510 CATGATCTCGATTCGCTGTGAAGAGCGTCTGGCCCTGGCGGTGAAACGCCCTGAGGCGTT 5569 | ||||||| || ||||||||||| || | |||||||| ||||| ||||| ||||| || Sbjct 23307 CCTGATCTCCATCCGCTGTGAAGAACGCGTCGCCCTGGCCGTGAAGCGCCCCGAGGCCTT 23366 Query 5570 CATCTACGGCTCCTTCACTGCGCCT 5594 ||| | ||| | ||||| | |||| Sbjct 23367 TATCCATGGCCCATTCACCGTGCCT 23391 Score = 390 bits (432), Expect = 3e-104 Identities = 788/1162 (68%), Gaps = 43/1162 (4%) Strand=Plus/Plus Query 2256 ACTGGCTTGGTGTGCCTATCAGCCTGACTACCGGCACG---TTCTGGGAGGAATGGTTTG 2312 ||||||| | ||||| ||| ||||| | || || | |||||| |||||||||| | Sbjct 19165 ACTGGCTCCGCGTGCCCATCGGCCTGCC---CGACAAGGCCTTCTGGCAGGAATGGTTCG 19221 Query 2313 GTACCAGCAGCAGCGGAAAGGTGGTCACGGCCGATAAAGCCATCCAGCTATCGGCTGTAT 2372 | ||| ||||||||| || | || ||| |||| || || | || ||| | || | Sbjct 19222 GCACCTCCAGCAGCGGTAAAGCCGTATCGGTCGATTCCGCAATGCGCCTGTCGACGGTCT 19281 Query 2373 GGGCATGCGTAAGGCTGTTAAGCGAGTCTATTTCAACCCTTCCGCTGAAAATATACGTTC 2432 |||| ||||| || || | || || |||| ||| | || ||||| | ||| | Sbjct 19282 GGGCCTGCGTGCGGTTGCTCTCGGAATCCGTTTCCACCTTGCCACTGAAGCTCTACCGGC 19341 Query 2433 GACAGCCTGACGGTTCGCGTAAAGCGGCAACAGATCATCCGGCTTATTCGATACTGTGCC 2492 ||| ||| || ||||| ||| || | || || || |||||| || ||||||||| Sbjct 19342 GACTGCCCGATGGTTCTCGTGAACCCGCCACCGACCATCCGCTGTACCGCGTACTGTGCC 19401 Query 2493 GCCGACCCAATTCAGAAATGACACCATCACGCTTTATGTTGATGGTGGTCGCCAGTATTT 2552 || ||| ||| |||||||| || ||||| ||| |||||||||||||||| | | Sbjct 19402 GCTCACCAAATCTTGAAATGACCCCGCAGCGCTTCATGCTGATGGTGGTCGCCAGCCTCT 19461 Query 2553 GCCTACGCGGTAATGCCTTTGTCGAGAAGCTGTTTATCGGCAATAAGC---TGGTTTCTC 2609 |||| || || || |||||| |||||||| | ||||| | || |||| | | Sbjct 19462 GCCTGCGTGGCAACGCCTTTATCGAGAAGAAAGTCATCGG---TCTGCGATTGGTGGCGC 19518 Query 2610 TGGTGCCATTGATGCCCCAGAACATGGTAGTAAAGCGGCTGGATACCGGGAGGCTGGAAT 2669 ||||||| ||| |||| || |||| || ||||| ||||| | ||| | || | | Sbjct 19519 TGGTGCCTTTGTTGCCGCAATGCATGACGGTCAAGCGCCTGGACAACGGTCGCTTGCAGT 19578 Query 2670 ACACCTACACCGAGG--ACGGCAAAAAACGAGTTATTCCCGAAAAGAACCTGATGCACAT 2727 || ||||| ||| | || | | |||| || | |||||| ||||| | ||||| Sbjct 19579 ACCTCTACAACGAAGCAACAGGGCAGCGCGAG--ATCTCGGAAAAGCACCTGGTACACAT 19636 Query 2728 CCGGGGATTTGGCCTTGATGGTGTCTGCGGCATGATGCCAATGATGACAGGTCGTGACGT 2787 ||| || || || || || || ||||||||||| |||| || | || || || ||| | Sbjct 19637 CCGTGGCTTCGGACTGGACGGCATCTGCGGCATGTTGCCGATCACCACTGGCCGCGACAT 19696 Query 2788 GATCGGCGCGGCGATGGCCGTCGAAGAATCCGCTGCAAAGATTTTCGAAAATGGCCTGCA 2847 ||||||| | ||| | | || || |||| || ||| | |||| || |||||||| Sbjct 19697 CTTCGGCGCCTCAATGTCGGCGGAGGAGGCCGCAGCCAAGGTCTTCGCCAACGGCCTGCA 19756 Query 2848 AAGCTCCGGGTTTCTTTCAGCTG-ACGTGGCGCTTGATAAG-------------GATCAA 2893 | ||| || || || | | || | | |||||| | ||| || ||| Sbjct 19757 AGCCTCGGGTTTCCTCACCGTTGAAGGCGGCGCTGCACAAGGCGCAGGCACCCTGACCAA 19816 Query 2894 AG-AGAGCG---ACTTCGGGGCTATA---TGCAGGCCTTTACCGGTTCTAAAAACGCCGG 2946 || | | || ||| | | || | | || ||| || | | | || ||||||||||| Sbjct 19817 AGAACAACGCGAACTCCTGCGCAAGAGCCTGGAGGAATTCAGCAGCTCGAAAAACGCCGG 19876 Query 2947 AAAAATTATGGTTCTTGAGGGCGGGCTGAAATATCAGAACGTCACTATGAACCCGGAAGC 3006 |||| ||||| || || | || ||||| || || | |||| |||||||| ||||| Sbjct 19877 TAAAACCATGGTGCTGGAAGCGGGCCTGAAGTACCAAGGCATCACCATGAACCCCGAAGC 19936 Query 3007 AGCGCAGATGCTTGAGTCGCGGTCGTTCAGCATCGAGGAAATCTGCAGATGGTTCCGCGT 3066 ||||||||||| ||| | || | |||| |||| || |||||| | ||||| || || Sbjct 19937 CGCGCAGATGCTGGAGACCCGCGCCTTCAATGTCGAAGAGATCTGCCGCTGGTTTCGTGT 19996 Query 3067 ACCGCCATTTATGGTCGGCCACACATCGAAACAGAGCAGCTGGGCATCGAGTCTTGAGGG 3126 ||||| || |||||||| |||| | || |||||||| ||||| ||||| | || | Sbjct 19997 GCCGCCGTTCATGGTCGGGCACATGACCAAGCAGAGCAGTTGGGCCGCGAGTGTCGAAGC 20056 Query 3127 TATGAACCTCCAGTTCCTGACGCACACCCTGCGCCCCCTGCTGGTGAACATAGAGCAGGA 3186 ||||| || ||||| || ||| |||||| || || ||||||| || || ||||| Sbjct 20057 ACAAAACCTGCATTTCCTCACCAACAGCCTGCGTCCGTTGTTGGTGAATATCGAACAGGA 20116 Query 3187 AATAGGACGGTGCCTGCTGGAC-AG-----CGATGATGAGGTTTTCGCGGAGTTCTCTGT 3240 ||| || |||||| | ||| || || || | | | |||| |||||| | || Sbjct 20117 AATCAATCGCTGCCTGATCGACGAGAACGACGCAGAAGGGATCTTCGTCGAGTTCGCCGT 20176 Query 3241 AGAAGGACTGCTGCGCGCCGACAGCGCGGGCCGTGCTGCGTACTATACCAGTGCGCTCCA 3300 |||||| |||||||| || |||||||| || || || | ||||| ||||| || Sbjct 20177 AGAAGGTCTGCTGCGTGCTGACAGCGCCGGTCGCGCCAGTTTCTATATCAGTGGTCTGAC 20236 Query 3301 GAATGGGTGGATGTCCCGCAATGACGTGCGCCGTCTTGAGAATATGCCACCGATTGAAGG 3360 | || ||||| |||||| || || |||||| |||| || | || || || || Sbjct 20237 TCACGGCTGGATCAACCGCAACGAAGTCCGCCGTTTTGAAAACCTACCGCCAATCCCTGG 20296 Query 3361 GGGTGACATTTACACCGTTCAG 3382 ||||| || | ||| || ||| Sbjct 20297 CGGTGAGATCTTCACGGTCCAG 20318 Score = 156 bits (172), Expect = 1e-33 Identities = 239/341 (70%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 3693 GGTGAAGGCGTAACAGCCAAACGTATCGCCGGTGCGCTTCGGGCGATGAATGGCGCCGAC 3752 || || ||||| || || ||||| || |||| ||| | || | || | ||||| ||| Sbjct 20547 GGCGAGGGCGTCACCGCGAAACGCATTGCCGCCGCGTTACGCACTATCGACGGCGCTGAC 20606 Query 3753 GTCACGGTCAATATTAACTCCCCTGGCGGGGACATGTTCGAAGGCCTGGCCATCTACAAC 3812 || ||||| || || ||||| || ||||| |||||||||||||||||||| ||||||||| Sbjct 20607 GTTACGGTGAACATCAACTCGCCGGGCGGCGACATGTTCGAAGGCCTGGCTATCTACAAC 20666 Query 3813 CTTCTGCGTGAATACGAAGGCCGTGTGACTGTGAAGGTGCTCGGTATTGCCGCCAGCGCC 3872 || ||||| || ||| ||| || | |||||||| || | ||||| || Sbjct 20667 CTGCTGCGGGAGTACTCCGGCAAGGTCGTCATCAAGGTGCTGGGGCTGGCCGCATCGGCA 20726 Query 3873 GCCTCGGTCATTGCGATGGCCGGGGATGAAATTCAGATCGGCCGTGGTGCCTTCCTGATG 3932 || || | |||| |||||||| || || | | |||| ||| | | || |||| Sbjct 20727 GCATCAATTGTTGCTATGGCCGGAGACGAGGTGCGCATCGCCCGCGCCGGATTTCTGAAC 20786 Query 3933 ATCCACAACTGCTGGGTCTACGCGATGGGTAACCGCCATGACTTTGCGGAACTGGCACAG 3992 || || || |||||||| || ||||| || || ||||| || | || |||| ||| Sbjct 20787 ATTCATAATTGCTGGGTAGTTGCCATGGGCAATCGTTATGACCTTACAGAGATGGCGCAG 20846 Query 3993 TCTCTTGAGCCGTTCGATACCGCTATGGCAGACATCTACGC 4033 || ||||||||| || |||||||| |||||||| Sbjct 20847 AGGCTGTTACCGTTCGATCAGGCCATGGCAGATATCTACGC 20887 >seq124742 Length=51505 Score = 93.3 bits (102), Expect = 1e-14 Identities = 195/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 15459 GCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15518 ||| |||||| ||| | |||||| || | ||||||||||||||| | | || ||||| Sbjct 34727 GCGCTACGGCGACAACCCGCTGGAGATCAGCGCCATCGGCTGCACCCGCGAATCCGAGGC 34786 Query 15519 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAACAACAAGGATCGCGTTGTTTCGTTTGA 15578 | || ||| |||| | ||||| ||| ||||||||| | ||| | || | Sbjct 34787 CCAGCGCCGGGGCAAGTGGGCGCTGCTCACGAACTCCAAGGATCGGGCGGTTACCTTCAA 34846 Query 15579 TGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15638 ||||| || ||||| ||| |||| ||| || ||| | ||| || | || ||||| || Sbjct 34847 GGTCGGCCTCGACGGGCGCATCCCGCTGCCTGGATACGTGATCCCCATCGCGGACGAACT 34906 Query 15639 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15698 ||| |||| | ||||||| || ||| || || ||||| || |||| || Sbjct 34907 GCTGGCCGGCCGGCCGGTGGGCGGGCGTATCTCAGCGGTGAACGGCAAGGTCATCACCCT 34966 Query 15699 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACATGCC 15749 ||||||| | | || || || || || || || |||||| |||| Sbjct 34967 GGACCGCGACACCCAAGCCAAGCCCGGCGACCGGCTGATCCTCAACCTGCC 35017 Score = 89.7 bits (98), Expect = 1e-13 Identities = 77/93 (83%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 14767 AAGATCGGCGACACGATGATGCT-GCAGAGCTTCACCGAGGTGATTGACGCCAAACTGCG 14825 |||||| |||||||||| | | || | |||||||||||||||| |||||||| | || Sbjct 34038 AAGATCTCCGACACGATGCAGATTGCCG-GCTTCACCGAGGTGATCGACGCCAAGATCCG 34096 Query 14826 CTACCCGAACACCGCGCTGCTCTACGTCGAATT 14858 |||||||||||||||||||| ||| |||| || Sbjct 34097 ATACCCGAACACCGCGCTGCTTTACATCGAGTT 34129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119993334756984