Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019720.1 Length=44120 Score E Sequences producing significant alignments: (Bits) Value seq124121 86.0 2e-12 >seq124121 Length=49848 Score = 86.0 bits (94), Expect = 2e-12 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 16005 AATTACGATCCGAAAACCCGAACCTAT-TCTGGTTCATGGTCCGGCGGGTTCAAAATGGC 16063 || |||||||| |||||| |||||| || || || ||| |||| || || | || Sbjct 33643 AACTACGATCCCGAAACCCATACCTATGTCGGGATC-TGGGACGGCACTTTTAAGCTCGC 33701 Query 16064 ATGGTCCAATAACCCTGCCTGGATCTTTTACGATCTGGTTCTGGATGAAATTTACGGCAT 16123 | ||| |||||||||||| ||| ||||| |||| ||| | ||||||| | Sbjct 33702 CTACAGCAACAACCCTGCCTGGGTCTGGTACGACCTGGCGCTGCACCCCTATTACGGCCT 33761 Query 16124 GGGCACGCGCGTGGATGCGTCCATGGTGGATAAGTGGGCGCTGTATTCAATCGCCCAGTA 16183 ||| ||| | | ||| | ||||| | | || ||||| |||||||||| Sbjct 33762 CGGCGAGCGGCTCAACGCGGCGATGGTCAACCGCTACGCCCTGTACCGCATCGCCCAGTG 33821 Query 16184 CTGTGACGAAATGGTTTCCGACGGGGCCGGTGGCACCGAACCGCGTTTCACCTGCAACGT 16243 || ||| ||||||| | ||||| || || ||||| ||||| |||||||||||| | Sbjct 33822 GTGCGACCAAATGGTCCCGGACGGCAAGGGCGGTACCGAGCCGCGCTTCACCTGCAACCT 33881 Query 16244 TTTCATTCAGAGCCAGGAGGACGC 16267 | | | || | |||||| || || Sbjct 33882 CTACCTGCAAACCCAGGAAGAGGC 33905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140840487332784