Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq124742 87.8 5e-13 >seq124742 Length=51505 Score = 87.8 bits (96), Expect = 5e-13 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 15456 GCGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAAGC 15515 ||| |||||| ||| | |||||| || | ||||||||||||||| | | || || || Sbjct 34727 GCGCTACGGCGACAACCCGCTGGAGATCAGCGCCATCGGCTGCACCCGCGAATCCGAGGC 34786 Query 15516 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAACAACAAGGATCGCGTTGTTTCGTTTGA 15575 | || ||| |||| | ||||| ||| ||||||||| | ||| | || | Sbjct 34787 CCAGCGCCGGGGCAAGTGGGCGCTGCTCACGAACTCCAAGGATCGGGCGGTTACCTTCAA 34846 Query 15576 TGTCGGGCTGGACGGCAACATTCCGCAGCCGGGCTACATCATCGCCGTGGCAGACGAGCT 15635 ||||| || ||||| ||| |||| ||| || ||| | ||| || | || ||||| || Sbjct 34847 GGTCGGCCTCGACGGGCGCATCCCGCTGCCTGGATACGTGATCCCCATCGCGGACGAACT 34906 Query 15636 GCTATCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 15695 ||| |||| | ||||||| || ||| || || ||||| || |||| || Sbjct 34907 GCTGGCCGGCCGGCCGGTGGGCGGGCGTATCTCAGCGGTGAACGGCAAGGTCATCACCCT 34966 Query 15696 TGACCGCG 15703 ||||||| Sbjct 34967 GGACCGCG 34974 Score = 84.2 bits (92), Expect = 6e-12 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 14764 AAGATCGGTGACACGATGACGCT-GCAGAGCTTCACCGAGGTGATTGACGCCAAACTACG 14822 |||||| ||||||||| | | || | |||||||||||||||| |||||||| | || Sbjct 34038 AAGATCTCCGACACGATGCAGATTGCCG-GCTTCACCGAGGTGATCGACGCCAAGATCCG 34096 Query 14823 TTACCCCAACACCGCGCTGCTCTACATCGAATT 14855 ||||| |||||||||||||| |||||||| || Sbjct 34097 ATACCCGAACACCGCGCTGCTTTACATCGAGTT 34129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127769881786792