Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019923.1 Length=42689 Score E Sequences producing significant alignments: (Bits) Value seq7763 318 2e-82 seq27595 159 9e-35 seq27069 152 1e-32 seq26725 116 1e-21 seq51760 84.2 6e-12 >seq7763 Length=1092 Score = 318 bits (352), Expect = 2e-82 Identities = 449/629 (71%), Gaps = 29/629 (5%) Strand=Plus/Minus Query 6144 AACGTGATCGACGCTGGCGGTACCGGCACCGACAACTCGTCCATCTGGCTGATCGGCTGG 6203 ||||||||| |||| ||||| ||||| ||| ||||| | ||||||||||||||||||||| Sbjct 830 AACGTGATCAACGCCGGCGGCACCGGTACCAACAACACCTCCATCTGGCTGATCGGCTGG 771 Query 6204 GGCGCCAACACCATCCACGGCATCTACCCGAAAGGCTCGCAGGCAGGCCTGATCCACAAC 6263 ||| | | || || ||||| |||| || || || || | || |||||| | | | Sbjct 770 GGCCCGCGCTCCGTCTACGGCTTCTATCCCAAGGGTTCCCGCGCCGGCCTGGTACGTGAA 711 Query 6264 GACCTAGGCGAGATTGACGCGTTCGATGCCAGCATGAACCGCTTCCGCGCCTACGGCGAC 6323 ||||| ||| ||||| ||||||| ||||| |||||||||||||||||| || Sbjct 710 GACCTGGGCATCCAGGACGCCTTCGATGTCAGCAACAACCGCTTCCGCGCCTACATGGAA 651 Query 6324 CAGTACCAATGGAAGGCCGGTATTGCCGTGCACGACTGGCGCTACGCCGTTCGTATCGCA 6383 || | ||| |||||| ||| | |||||| |||||||||||||| || || ||||| Sbjct 650 CACTTCCAGTGGAAGTGTGGTGTCGCCGTGGCCGACTGGCGCTACGTGGTCCGCATCGCC 591 Query 6384 AACATCGACAACAGCGACCTGACCAAGAACGCCAGCGCCGGCGCCGACATCATCGACCTG 6443 |||||||| | | | || |||||||||||| | ||||||||| ||||||||||| Sbjct 590 AACATCGATGTGACCCAACTCACCAAGAACGCCGCTTCGGGCGCCGACCTCATCGACCTG 531 Query 6444 ATGACCCAGGCCCTGGAACTGATCCACAGCCTGAACGGCGTAACCCCAGTGTTCTACGTG 6503 ||||||||||||||| ||||||||||||| ||| || ||| |||||||||| Sbjct 530 ATGACCCAGGCCCTGACCACCATCCACAGCCTGACCGGTGTGCGCCCGGTGTTCTACG-- 473 Query 6504 CCGCGCCGCATCCGT--TCG--TTCCTGCGCCGCCAGACCGTGAACAAGGTGGCCGCATC 6559 | ||||| |||| ||| |||||||||||||| | || ||||||||| |||| Sbjct 472 -CCAACCGCA-CCGTGCTCGGCGTCCTGCGCCGCCAGGCAGTCAACAAGGTGTCCGCCGG 415 Query 6560 GACCCTGTCTTACGACAACGTTGCAGGCAAGCCAGCGCTGATGTTCGGTGAAGTCCCTGT 6619 |||||| | |||| | | || ||||||| | | |||||||||| |||| ||| || Sbjct 414 TACCCTGCGTATCGACGAGATCGCCGGCAAGCGCGTGGTGATGTTCGGCGAAGCCCCGGT 355 Query 6620 CCGTCGGGTTGACGCGATGCTGAACTCTGAGGCTCGGGTAGTCTGACTACCCGCTTCATC 6679 || | | ||||| || || | | |||| || | || | | Sbjct 354 TCGCCAGACCGACGCCATTCTCACCACTGAAGC-------------CGCCCTGGT----- 313 Query 6680 ACACAGGAGAAACCCTTATGTACGTCGACAAGCAAGCAGAGTTCTCGGACGCCCAGGCGG 6739 | ||||| || | ||| | ||||| ||||||||||||||| ||| ||||| | Sbjct 312 -CTAAGGAG--ACAATCATGATCCTCGACGTGCAAGCAGAGTTCTCCGACAGCCAGGTTG 256 Query 6740 TCACCGCAACCGCGATCTCGACCAACGTC 6768 |||| | ||||| |||| |||||| || Sbjct 255 TCACTGGCACCGCTGTCTCCACCAACATC 227 >seq27595 Length=1905 Score = 159 bits (176), Expect = 9e-35 Identities = 334/485 (69%), Gaps = 21/485 (4%) Strand=Plus/Plus Query 30746 TCATCGCGGTAAACCCGGATGTGGAACAGCGGCATGCCCTTCCAGTAGGAGGCAAAGTCC 30805 ||||| ||||| | || | |||||||||||||||| ||||||| | ||||| Sbjct 1076 TCATCCCGGTACGCACGCTTCACGAACAGCGGCATGCCCGGCCAGTAGCTGATGAAGTCG 1135 Query 30806 AGCCATTCGCGCTCGGAGATCCATAGGCCAGATTGGCACTGGGCTACGTGCTCGCTTGGA 30865 | ||| ||||||||||| | ||||||||| | ||||||||||| | ||| || | || Sbjct 1136 ATCCACTCGCGCTCGGATACCCATAGGCCGGCCTGGCACTGGGCGATGTGTTCCTTGGGG 1195 Query 30866 AGCACGCCGGCCAGGATGACTTCGATCTGGAACTTCGGCAGCTTGGTCTTGATCTCGGCC 30925 | | ||||||| ||||| || ||| ||| ||||| |||||||| | |||||||||| || Sbjct 1196 ATCTCGCCGGCGAGGATCACACCGACCTGAAACTTGGGCAGCTTCGACTTGATCTCGACC 1255 Query 30926 AGGCCCTTGTCA---CCGATGATTCCGTCAGGGCTGTAGCCGCAGCCGTGGTTCAGGATC 30982 ||||| |||| ||||| | |||||||| ||||||| || ||||| ||||| Sbjct 1256 AGGCC---GTCAGTGCCGATCAAGCCGTCAGGCGAGTAGCCGATACCATGGTTGAGGATG 1312 Query 30983 AGGCCGCAGGTGTCGATCTGTACGTCAAGCCT--GT---TGGCCAGGGCATCGCGCGCCG 31037 | ||| | | | || || || || ||| || || || || | ||| ||| Sbjct 1313 ATCCCG-ACCT---GGTCGGTCCGGCATTCCTCGGTGTCTGCATAGAGC-TTGCGGGCCA 1367 Query 31038 CGCCTTCCCATTCATGCCCTCGAGCGGTATGGGCATTACCTCCGAACGTGTCTGCTGACT 31097 | ||| ||||| || || |||| ||| || || || |||| ||| || ||| Sbjct 1368 CCAGCTCCATCTCATGGCCGCGTTCGGTGTGGCGGTTGCCGCCAAACGCGTCAGCAGACA 1427 Query 31098 CGCCGGTAAAGCGCTCTCCAATGAGTTCGTGCAT-CAGCGTGAATGCGCCGGCACCG-AG 31155 | || || | |||||| || || || | || ||| ||| | | ||| | |||||| || Sbjct 1428 CACCCGTGATGCGCTCACCGATCAGCTGGTCCATGTAGC-TCAGTGCCTCAGCACCGAAG 1486 Query 31156 CCCTGATTTGTGCTTGCCATCCACCAGCAGGCATTGCATGACAGAGGCCGTCAGGATTCC 31215 || | | | |||||| | |||||||||| | | | || ||||| | || ||| Sbjct 1487 CCACGCTCT-CCCTTGCCGTTGACCAGCAGGCTTCCAACTTCGGAAGCCGTGATGA-TCC 1544 Query 31216 CAAGC 31220 ||||| Sbjct 1545 CAAGC 1549 >seq27069 Length=1825 Score = 152 bits (168), Expect = 1e-32 Identities = 197/269 (73%), Gaps = 10/269 (4%) Strand=Plus/Minus Query 4046 GAGGTGGCCCAGCGCAAGGAAGAGAAGATGCTGATGCTTGGCCCTGTGGTCGAGCGCAAC 4105 ||| | ||| | |||||||||||||||||||||||||||||||||||| | ||||||| | Sbjct 1325 GAGATCGCCGAACGCAAGGAAGAGAAGATGCTGATGCTTGGCCCTGTGCTGGAGCGCATC 1266 Query 4106 AACGACGAACTGTTTGATCCGCTGATCGACCAAGTCTTCTCGATCATGTACGAGGCCAG- 4164 |||||||| ||| | || ||||||||||||| |||||| |||||| | ||||| Sbjct 1265 AACGACGAGCTGCTGGACCCGCTGATCGACCGCGTCTTCAACATCATG--CTGCGCCAGT 1208 Query 4165 -CATTCCGTACTGGATGGGCTTGCGC---GAGGGCGAGCCGCTGATCCCACCGCCGCCCG 4220 | | ||| |||| ||| ||| || |||||||| || | || ||||| || | Sbjct 1207 CCTTGCCGATCTGGGAAGGC---CGCATTGAAGGCGAGCCCATGTTGCCCCCGCCTCCGG 1151 Query 4221 AGGAACTGCAAGGCGTGCCGCTTCGTGTTGAGTACGTCAGCATCCTGTCTCAAGCACAGA 4280 | ||| | ||| || || || ||||||||| ||||||| | || || |||| Sbjct 1150 AAGAAATCGCCGGCCTGGAACTCAAGGTCGAGTACGTCTCCATCCTGGCCCAGGCGCAGA 1091 Query 4281 AGGCCGTGGCTGCCAGCGGCATCGAGCGC 4309 || || || | ||| || |||||||||| Sbjct 1090 AGTCCATGAATACCACCGCCATCGAGCGC 1062 >seq26725 Length=1775 Score = 116 bits (128), Expect = 1e-21 Identities = 183/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Minus Query 1185 CGACAAGGTGTGGGAAGTGGCTGAGGGTGCGCTGACTGACGAGAACACCGAGATCATATG 1244 ||||||| | ||||||||||| ||||||| |||||||||| |||| | || Sbjct 1132 CGACAAGATTTGGGAAGTGGCCGAGGGTGGCCTGACTGACGG------CGAGCCGTTCTG 1079 Query 1245 GGTGGCATTCGGCAACCCGACGCGCAACACAGGCCGATTCCGCGAGTGCTTCCGCAAGTT 1304 | | | ||||||||||| || || | ||| ||||| ||||| ||||||| |||||||| Sbjct 1078 GTTCGTCTTCGGCAACCCCACCCGGACCACCGGCCGCTTCCGTGAGTGCTGGCGCAAGTT 1019 Query 1305 CAAGCACCGGTGGAAGTGCAAGCAGATCGA----TGCCAGGACTGTTGAAGGCACCAACA 1360 | || || |||||| | |||||||| |||||| | || | || |||| Sbjct 1018 CCGCCATCGCTGGAAGACCCGTCAGATCGACAGCCGCCAGGCC--AAGATG--ACGAACA 963 Query 1361 AGACCCAGCACCAGAAGTGGATTGATGACTGGGGTGAAGATTCCGACTTCGTCCGCGTCC 1420 || || | | || ||||| || |||| || ||||| ||||||||| || || | Sbjct 962 AGGACCTGATCAAGCAGTGGGCTGCCGACTACGGCGAAGAGTCCGACTTCTTCAAGGTTC 903 Query 1421 GTGTGCGCGGCATGTTCCCG 1440 | ||||| ||| |||||||| Sbjct 902 GCGTGCGTGGCCTGTTCCCG 883 >seq51760 Length=3249 Score = 84.2 bits (92), Expect = 6e-12 Identities = 132/188 (70%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 9020 CAAGCCTCAGACGCTCTGGTTTAGCCGTACAGGCGTGTTCACCAACTTCGGCTACTCGTT 9079 ||| || ||||| | ||| | ||||| || || | |||| ||||||||||||||| Sbjct 3222 CAATCCGCAGACCGTGTGGATGAGCCGGACCGGTGCGTTCCACAACTTCGGCTACTCCAC 3163 Query 9080 CCCAACCAAAGACGACGACGCGATCACATGGACGATTGCGAGCAACGAGGTGAACCAGAT 9139 || ||||| ||||||||||||||||| | || | || | ||||||||| || Sbjct 3162 GCCGACCAAGGACGACGACGCGATCACCTTCACCCTGGCCTCACGCCAGGTGAACCGCAT 3103 Query 9140 CAACCATGTGATGCCTCTGCGTGCCCTGATGACCTTCACCGACGGTGCAGAGTGGATCAT 9199 ||| || |||| ||||||| ||| || | ||| || |||||||||| || Sbjct 3102 TCGCCACCTGGTGCCGCTGCGTGAGCTGCTGCTGCTGACCTCGGGCGCAGAGTGGACCA- 3044 Query 9200 TCAGGGGC 9207 |||| ||| Sbjct 3043 TCAGCGGC 3036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136268491112712