Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq124742 152 2e-32 >seq124742 Length=51505 Score = 152 bits (168), Expect = 2e-32 Identities = 260/370 (70%), Gaps = 9/370 (2%) Strand=Plus/Plus Query 29502 GGCAGGACAGTGCTTGGCCAGGCTGAAGAGGTAATGATGCGTGCCGGCGGATGGCAAAAG 29561 || |||||||| || |||||||| || ||||| | | || || || || ||||| || Sbjct 11266 GGAAGGACAGTCCTGGGCCAGGCCGAGCAGGTAGCGTTCCGCGCGGGTGGCTGGCAGAAA 11325 Query 29562 GCCCGAATGGAACAGCAGATGAATGAGTGGTTCGGGCACAAGCCGGACTTCATCATCACG 29621 ||||||||||| || |||||| | || |||||||| | ||||| |||||||||||| Sbjct 11326 GCCCGAATGGAGCAACAGATGCACGATTGGTTCGGCGATGTGCCGGCCTTCATCATCACC 11385 Query 29622 CTGGCTGCTGACTATTGCCTGCAATGCTCCGATTTAGACTTCTGCGCACTGGTAGAGCAT 29681 |||| |||||||| ||| || ||| ||| | || |||||||| ||| | || || Sbjct 11386 TTGGCCGCTGACTACTGCGCCCAGTGCAGCGACCTTGAGTTCTGCGCCCTGATCGAACAC 11445 Query 29682 GAGCTTTATCACATCGCCCAAGAAGTGGATGAGTTTGGCTCACCGAAGTTTTACCGCGAC 29741 ||||| |||||| | || || | || ||| || ||| | | || ||| | | Sbjct 11446 GAGCTGTATCACCTGGCTCACGCTACCGACAAGTACGG-TCAACCAGCATTCACC-CAAG 11503 Query 29742 TCAGGTAAGCCGAAGCTTTGCATGC-GCGGA--CATGATGTTGAGGAATTCGTTGGCGTT 29798 | ||| |||||| | || || || || || || || || || ||||| || || Sbjct 11504 AC-GGTGCACCGAAGAT---CAAGCTGCAGAGCCACGACGTCGAAGAGTTCGTCGGTGTG 11559 Query 29799 GTCCGTCGATATGGCGCAAGCGCTGATGTCCAGGAATTAGTAGATGCGGCAAATAAACCA 29858 ||||| || || || |||||| |||| || || | || || ||||| ||||| | || Sbjct 11560 GTCCGCCGCTACGGTGCAAGCCCTGACGTTCAAGCGTTGGTGGATGCTGCAAACAGTCCT 11619 Query 29859 GCAGAGGTGG 29868 || ||||||| Sbjct 11620 GCTGAGGTGG 11629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151994113331576