Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq124742 187 6e-43 seq124121 98.7 2e-16 >seq124742 Length=51505 Score = 187 bits (206), Expect = 6e-43 Identities = 544/828 (66%), Gaps = 30/828 (4%) Strand=Plus/Minus Query 3156 ACGCGGTACTGCTGGATTGCCACATCCTGCGCATCCACCGACCAGACCGCCTCGCGCTCC 3215 || ||||| || |||| |||| || | ||||||| || ||| || |||||||| Sbjct 35158 ACCCGGTATAGCGGGATGGCCAGGTCATCGGCATCCAGCGCCCAAACAAGTTCGCGCTCT 35099 Query 3216 GGCGTTTCGCTGAATA--CCGCAGATACCGTGACGTTTCGGCCGCTGACCGCCTGAAGGG 3273 |||| | | || || | ||| || || || | |||||| || ||| || | || Sbjct 35098 GGCGG--CACAGAGTAGGCAACAGTCACGGTAACCTGTCGGCCACTTACCAGTTGCACGG 35041 Query 3274 TACGGGCCTGTGATTTGCCGGACGGCAGGTTGACGATAAGCCTGTCGCCCGCTTTTGCAT 3333 |||| ||| | |||||| |||||||||| ||| |||| |||||| | || || | Sbjct 35040 TACGCCCCTCGCACTTGCCGTCTGGCAGGTTGAGGATCAGCCGGTCGCCGGGCTTGGCTT 34981 Query 3334 CCGGCGCCCGGTCGAGCGTCAGCGCGCGACCGTTCACC--TGACTGATACGCCCGCCCAT 3391 | | ||||| || || | | ||||||||| ||| |||||||||||||| Sbjct 34980 GGGTGTCGCGGTCCAGGGTGATGACCTTGCCGTTCACCGCTGA--GATACGCCCGCCCAC 34923 Query 3392 CACCCGCCCCGACAGATACTGATCCGCCACGCCGATGATATGGCCCGGCAGCGGGATCAT 3451 | ||| || | ||| | ||||| | | ||| | | || ||||||||||| Sbjct 34922 CGGCCGGCCGGCCAGCAGTTCGTCCGCGATGGGGATCACGTATCCAGGCAGCGGGATGCG 34863 Query 3452 GCCTTCCAGCCCAGTGGTGAAACTCACCATCCGGTCTTTAGCATTTGTCAGCAGCGCCCA 3511 || || || || |||| | ||| ||| || || | || || ||||||||||| Sbjct 34862 CCCGTCGAGGCCGACCTTGAAGGTAACCGCCCGATCCTTGGAGTTCGTGAGCAGCGCCCA 34803 Query 3512 GCGGCCGCGGCGGTTGGCCTCGG-TACGCCGCGTGCAGCCGATGGCGGATATCTGCGTCT 3570 ||| ||||| | |||||||| | ||| | ||||||||||||||| |||| | | Sbjct 34802 CTTGCCCCGGCGCTGGGCCTCGGATTCGCGG-GTGCAGCCGATGGCGCTGATCTCCAGCG 34744 Query 3571 GGCGCACGCCGTAGCGCCGCACCAGATCAGGCTCCATCACCGCTTCCACTTCATCGGTGT 3630 || ||||||||||||| || | | || | || ||| | | ||||||| Sbjct 34743 GGTTGTCGCCGTAGCGCCGTTGAAGCTTGGCATCGGTTACAGCTGTGA---CGTCGGTGT 34687 Query 3631 ---AATGGTTCTCCGGGTTTGACCAGCTCACCATCGCCGTTGAATAACGGTTCTTCTCGC 3687 | | |||| |||||| |||| | | ||| | || ||| | ||| Sbjct 34686 CGAAGTTGTTCAGCGGGTTGTCGTAGCTGATGAGCGCGCGAGTGTAGCGGGTGCGCTCCG 34627 Query 3688 TGCCGCTGGCGTAGGAGAATTTGCCGTCAATAACGTTGGCGCGGGTGTAGACATACGTC- 3746 |||||| ||||| ||| |||||||| || ||||| || ||||||||| | | ||| Sbjct 34626 ACGCGCTGGAGTAGGTGAACTTGCCGTCGATGACGTTAGCCCGGGTGTAGGC-GAAGTCG 34568 Query 3747 ATATCG------CGCGGCATATCCGCCAGCGCGGCCAGCTGATTACCGGCCCAGTATGTC 3800 | ||| |||||||||||||||| | | | ||| ||||||||| ||| Sbjct 34567 AAGTCGGTGGCCCGCGGCATATCCGCCAAGGTGAAGACCTGGCCTTGGGCCCAGTAGGTC 34508 Query 3801 ATGCCGCGGAAGATGCTCGCCAGGTCGCGCAGCACCGTAAACGCCTCGTTCTGGCTCTGG 3860 ||||| ||| |||| ||| | |||||| |||| || | || || || ||| || Sbjct 34507 ATGCCACGGTAGATCGTCGATATGTCGCGAAGCAGCGACCAAGCGTCAGCCTTGCTTTGC 34448 Query 3861 ATATACACGTCGCAGAGAAAACGTGGCTCAGTACCGCTGCCGCCGGTACCGTCCGGCACG 3920 | | || || ||||| || || |||| | ||| || | |||| |||||| Sbjct 34447 AGGTTCAGGTTGCAGATGAAGCGAGGCT------CTTGGCCACCCTTCCCGTTCGGCACC 34394 Query 3921 GGCTGATCGCAGTGCTGCGCGATGCGGTAGAGTTCCCACTTGTCCACC 3968 ||| ||||| ||||| ||||||||| || ||||||||||||||| Sbjct 34393 AACTGGTCGCAAAACTGCGAGATGCGGTACAGCTCCCACTTGTCCACC 34346 >seq124121 Length=49848 Score = 98.7 bits (108), Expect = 2e-16 Identities = 311/476 (65%), Gaps = 22/476 (5%) Strand=Plus/Minus Query 3775 CCAGCTGATTACCGGCCCAGTATGTCATGCCGCGGAAGATGCTCGCCAGGTCGCGCAGCA 3834 ||| ||| | ||| |||| || | ||||||| ||||||| || | ||| || | Sbjct 33973 CCATCTGGCTGCCGTCCCAATAGGCCATGCCGTGGAAGATCGAGGCGATGTCTTCAAGGA 33914 Query 3835 CCGTAAACGCCTCGTTCTGGCTCTGGATATACACGTCGCAGAGAAAACGTGGCTCAGTAC 3894 | | ||||||| | |||| | || | || | || |||| || || ||||| |||| Sbjct 33913 CGATGTACGCCTCTTCCTGGGTTTGCAGGTAGAGGTTGCAGGTGAAGCGCGGCTCGGTAC 33854 Query 3895 CGCTGCCGCCGGTACCGTCCGGCACGGGCTGATCGCAGTGCTGCGCGATGCGGTAGAGTT 3954 ||| | | |||||||| || || ||||| ||| ||||||||||| || Sbjct 33853 CGC------CCTTGCCGTCCGGGACCATTTGGTCGCACCACTGGGCGATGCGGTACAGGG 33800 Query 3955 CCCACTTGTCCACCTGCGTCGCATCCAGCCGGTCTCCGATCCCGAAACGGTCACTTAGCA 4014 | | || ||| || ||| | ||||| || |||| ||| || | ||| Sbjct 33799 CGTAGCGGTTGACCATCGCCGCGTTGAGCCGCTCGCCGAGGCCGTAATAGGGGTGCAGCG 33740 Query 4015 CCAGGTCGTAAAACACCCATGCGGGATTATTGCTCCAGGCCCATTTAAACGAGCCGTCCC 4074 |||||||||| | ||||| || || || ||||| |||| ||||| | |||||||| Sbjct 33739 CCAGGTCGTACCAGACCCAGGCAGGGTTGTTGCTGTAGGCGAGCTTAAAAGTGCCGTCCC 33680 Query 4075 AGGTGCCGGAATAGGTGCGCGCCACCGGATCGTATGTCGTGGGCACGCGGA-TTTGCCGC 4133 || | ||| |||||| | | | |||||||| | |||||||||| | ||| || Sbjct 33679 AGATCCCGACATAGGTATGGGTTTCGGGATCGTAGTTGCTGGGCACGCGCAGGATGCGGC 33620 Query 4134 CCGCGGGCGCGT--ACGCTGA---TTTGCGGAATATTGCTGAACTGCTTCGCGTTGAA-- 4186 | |||| | ||| || |||| || | ||| |||| |||| |||| ||| Sbjct 33619 C-----GCGCATCAGCGCCGAGAGTTTG-GGCACGTTGTTGAATTGCTCGGCGTCGAATT 33566 Query 4187 CGACACAAAGAGCAGCGCGGTGTTCGGGTAGCGCAGCTTTGCATCGATGATTTCGG 4242 ||| || | || |||||| |||||| ||| | || ||||||||||||| Sbjct 33565 CGATACCA--CCCACGGCGGTGAGGGGGTAGGTCAGTTCGGCGTCGATGATTTCGG 33512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124520601454288