Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_020198.1 Length=36947 Score E Sequences producing significant alignments: (Bits) Value seq124742 82.4 2e-11 >seq124742 Length=51505 Score = 82.4 bits (90), Expect = 2e-11 Identities = 164/238 (69%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 11477 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACGCAACAACT 11536 |||| ||||| | |||||| || ||||||||||||| || | ||| | | Sbjct 39370 AACC-CGCGGGGTGCGCAACCGAAATCCCGGCAACATCGACTACAACCCTGCCAATCAAT 39428 Query 11537 GGCAGGGCCAGCTCCCGCACAACCCGAAGGTCGAGCCGCGTTTCGCCCGTTTCGATACCG 11596 |||||||||||||| || | || | |||||| ||| || || || |||||||| | Sbjct 39429 GGCAGGGCCAGCTCAAGCCAGATCCTACCGTCGAGAAGCGCTTTGCTCGGTTCGATACGG 39488 Query 11597 CACATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTATC-GC-AAGGTCCACGG 11654 | | ||||| || || ||| ||| ||||||||||||| ||| | || || | ||||| Sbjct 39489 CGGAAAACGGCATTCGTGCCCTGGGGAAGCTGCTGCTGACCTACCAGCGAAAG--CACGG 39546 Query 11655 CCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACACC 11712 |||| || || | | | || || |||||||| || |||||||||||| Sbjct 39547 CCTGAAGACGGTGAAGGCAATCATAAGCCGGTGGGCGCCTTCGGTGGAGAACGACACC 39604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117922996846008